Hb_006787_090

Information

Type -
Description -
Location Contig6787: 66656-74016
Sequence    

Annotation

kegg
ID rcu:RCOM_0812560
description hypothetical protein
nr
ID XP_012087498.1
description PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RYF2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0812560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53635: 66607-67179 , PASA_asmbl_53636: 67263-68092 , PASA_asmbl_53637: 68107-68316 , PASA_asmbl_53638: 68691-72926 , PASA_asmbl_53640: 73023-73894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006787_090 0.0 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
2 Hb_000311_120 0.0556319713 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
3 Hb_010174_090 0.068790863 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_003752_070 0.0730566657 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
5 Hb_000284_130 0.0800345291 - - sodium-bile acid cotransporter, putative [Ricinus communis]
6 Hb_000613_120 0.0835484337 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000144_060 0.0862971595 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004871_010 0.0871831501 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
9 Hb_021650_010 0.0873504382 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
10 Hb_000976_190 0.0934540385 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
11 Hb_005389_170 0.0958000682 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
12 Hb_011310_140 0.0962551651 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
13 Hb_002997_070 0.0997869402 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
14 Hb_163950_070 0.1014443139 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
15 Hb_031042_060 0.1019890431 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000802_130 0.1029718723 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
17 Hb_000309_020 0.105131788 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
18 Hb_001438_010 0.1056751259 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
19 Hb_000580_150 0.1060316927 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
20 Hb_011861_050 0.1060518361 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006787_090 Hb_006787_090 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_000311_120--Hb_010174_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_000555_020 Hb_000555_020 Hb_000311_120--Hb_000555_020 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010 Hb_003529_140 Hb_003529_140 Hb_000311_120--Hb_003529_140 Hb_010174_090--Hb_000613_120 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090 Hb_021732_010 Hb_021732_010 Hb_000284_130--Hb_021732_010 Hb_004994_080 Hb_004994_080 Hb_000284_130--Hb_004994_080 Hb_000181_060 Hb_000181_060 Hb_000284_130--Hb_000181_060 Hb_000364_100 Hb_000364_100 Hb_000284_130--Hb_000364_100 Hb_000284_130--Hb_003752_070 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_000345_370 Hb_000345_370 Hb_000144_060--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4534 5.04873 19.6954 5.61542 5.98744 4.81804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8897 5.60997 3.05899 4.0145 20.2863

CAGE analysis