Hb_000580_150

Information

Type -
Description -
Location Contig580: 100502-105370
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06330g
description POPTRDRAFT_1097965; hypothetical protein
nr
ID XP_012083597.1
description PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID O22145
description Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2
trembl
ID A0A067JXU7
description Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial OS=Jatropha curcas GN=GCP1 PE=3 SV=1
Gene Ontology
ID GO:0005743
description glycoprotease 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49850: 103021-105176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_150 0.0 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
2 Hb_000311_120 0.0760501152 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
3 Hb_009775_010 0.0801561306 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
4 Hb_001438_010 0.0896352833 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
5 Hb_000221_140 0.0940212177 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_010174_090 0.0998944398 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_001935_100 0.1015404511 - - structural molecule, putative [Ricinus communis]
8 Hb_003747_230 0.1032385735 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
9 Hb_006787_090 0.1060316927 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
10 Hb_001109_050 0.1063603396 - - PREDICTED: ankyrin-1 [Jatropha curcas]
11 Hb_001410_070 0.1068479136 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
12 Hb_000300_180 0.108546107 - - transcription initiation factor brf1, putative [Ricinus communis]
13 Hb_033312_010 0.1091080375 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001587_180 0.1106059876 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
15 Hb_005946_040 0.1115891827 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
16 Hb_006538_120 0.1116356645 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
17 Hb_000173_250 0.1118761487 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
18 Hb_005389_170 0.111919668 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
19 Hb_000802_130 0.1122535627 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
20 Hb_005494_010 0.1136714964 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000580_150 Hb_000580_150 Hb_000311_120 Hb_000311_120 Hb_000580_150--Hb_000311_120 Hb_009775_010 Hb_009775_010 Hb_000580_150--Hb_009775_010 Hb_001438_010 Hb_001438_010 Hb_000580_150--Hb_001438_010 Hb_000221_140 Hb_000221_140 Hb_000580_150--Hb_000221_140 Hb_010174_090 Hb_010174_090 Hb_000580_150--Hb_010174_090 Hb_001935_100 Hb_001935_100 Hb_000580_150--Hb_001935_100 Hb_000311_120--Hb_010174_090 Hb_006787_090 Hb_006787_090 Hb_000311_120--Hb_006787_090 Hb_000555_020 Hb_000555_020 Hb_000311_120--Hb_000555_020 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010 Hb_003529_140 Hb_003529_140 Hb_000311_120--Hb_003529_140 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_009775_010--Hb_000221_140 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_001438_010--Hb_003053_110 Hb_001195_770 Hb_001195_770 Hb_001438_010--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_001438_010--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180 Hb_000221_140--Hb_006538_120 Hb_000221_140--Hb_001660_120 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_010174_090--Hb_006787_090 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60042 3.70489 10.0019 2.18093 2.91894 3.39027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.39837 5.16332 3.08512 3.8079 12.0718

CAGE analysis