Hb_005405_020

Information

Type -
Description -
Location Contig5405: 23966-31165
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23170g
description POPTRDRAFT_1072847; hypothetical protein
nr
ID XP_012066240.1
description PREDICTED: petal death protein isoform X1 [Jatropha curcas]
swissprot
ID Q0QLE4
description 2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1
trembl
ID A0A067L6L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23810 PE=4 SV=1
Gene Ontology
ID GO:0009507
description phosphoenolpyruvate carboxylase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47852: 24081-30976 , PASA_asmbl_47853: 26421-27129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005405_020 0.0 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
2 Hb_000212_440 0.0670649788 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_009225_020 0.0758978373 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
4 Hb_003376_230 0.0778968416 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
5 Hb_003153_010 0.0787557005 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
6 Hb_000797_040 0.0810095166 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
7 Hb_000224_160 0.0819042003 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_000221_140 0.0845617381 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000212_230 0.0851593595 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
10 Hb_000207_300 0.0853317963 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
11 Hb_002496_020 0.0885293591 - - DNA binding protein, putative [Ricinus communis]
12 Hb_133702_010 0.0917641531 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_003728_100 0.0918338708 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
14 Hb_004452_120 0.093631954 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
15 Hb_000665_120 0.0941532216 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
16 Hb_000479_250 0.0942428024 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
17 Hb_001314_080 0.0945677555 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
18 Hb_021374_030 0.0958505379 - - hypothetical protein RCOM_0351490 [Ricinus communis]
19 Hb_000521_250 0.0961214138 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
20 Hb_012150_030 0.096470769 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005405_020 Hb_005405_020 Hb_000212_440 Hb_000212_440 Hb_005405_020--Hb_000212_440 Hb_009225_020 Hb_009225_020 Hb_005405_020--Hb_009225_020 Hb_003376_230 Hb_003376_230 Hb_005405_020--Hb_003376_230 Hb_003153_010 Hb_003153_010 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_003728_100 Hb_003728_100 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_003462_070 Hb_003462_070 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003376_230--Hb_003153_010 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_001584_200 Hb_001584_200 Hb_003376_230--Hb_001584_200 Hb_004108_160 Hb_004108_160 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_002205_030 Hb_002205_030 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7997 5.97426 14.7186 11.2657 9.00571 11.9384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3319 9.29603 9.20998 10.1151 20.9587

CAGE analysis