Hb_011716_130

Information

Type -
Description -
Location Contig11716: 104597-107689
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15470g
description POPTRDRAFT_819272; hypothetical protein
nr
ID XP_011010649.1
description PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
swissprot
ID Q9SU91
description Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial OS=Arabidopsis thaliana GN=LPXA PE=1 SV=1
trembl
ID B9H8W0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s15470g PE=4 SV=2
Gene Ontology
ID GO:0008780
description probable acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05321: 92208-104800 , PASA_asmbl_05322: 105045-105441 , PASA_asmbl_05323: 106365-106618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_130 0.0 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
2 Hb_005847_060 0.0607879861 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
3 Hb_002811_130 0.0750152745 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
4 Hb_000815_070 0.0765692515 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
5 Hb_000224_160 0.0770046278 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_002600_090 0.080415886 - - ATP binding protein, putative [Ricinus communis]
7 Hb_012022_150 0.0843850814 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
8 Hb_022693_140 0.0864002857 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
9 Hb_032264_070 0.0874019399 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
10 Hb_001322_110 0.0916400219 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001971_010 0.0923852479 - - F23N19.4 [Arabidopsis thaliana]
12 Hb_006274_030 0.0929874147 - - F-box and wd40 domain protein, putative [Ricinus communis]
13 Hb_018133_090 0.0930596142 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002014_030 0.0931900024 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
15 Hb_001268_420 0.094313561 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
16 Hb_002871_190 0.095393152 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
17 Hb_003939_050 0.0971115729 - - protein with unknown function [Ricinus communis]
18 Hb_001584_200 0.0973085673 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
19 Hb_029879_010 0.0978137424 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
20 Hb_003153_010 0.0982642075 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_011716_130 Hb_011716_130 Hb_005847_060 Hb_005847_060 Hb_011716_130--Hb_005847_060 Hb_002811_130 Hb_002811_130 Hb_011716_130--Hb_002811_130 Hb_000815_070 Hb_000815_070 Hb_011716_130--Hb_000815_070 Hb_000224_160 Hb_000224_160 Hb_011716_130--Hb_000224_160 Hb_002600_090 Hb_002600_090 Hb_011716_130--Hb_002600_090 Hb_012022_150 Hb_012022_150 Hb_011716_130--Hb_012022_150 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_000329_320 Hb_000329_320 Hb_000815_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_000815_070--Hb_000985_030 Hb_000815_070--Hb_002600_090 Hb_032264_070 Hb_032264_070 Hb_000815_070--Hb_032264_070 Hb_001489_080 Hb_001489_080 Hb_000815_070--Hb_001489_080 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_002600_090--Hb_000599_250 Hb_000260_030 Hb_000260_030 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_002600_090--Hb_001489_080 Hb_012022_150--Hb_022693_140 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30735 1.15303 3.77395 2.35181 2.66451 3.65406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77262 4.66246 3.78359 2.81201 5.33762

CAGE analysis