Hb_002163_040

Information

Type -
Description -
Location Contig2163: 54604-57451
Sequence    

Annotation

kegg
ID rcu:RCOM_1116370
description hypothetical protein
nr
ID XP_002525314.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH45
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1116370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_H02.ab1: 54712-55175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012022_150 0.06814811 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
3 Hb_000080_120 0.0698685706 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
4 Hb_000224_160 0.0781759629 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_006117_040 0.0840402854 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
6 Hb_001584_200 0.0905626709 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
7 Hb_022693_140 0.0916025526 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
8 Hb_001322_140 0.0944914533 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
9 Hb_002893_070 0.0968716569 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
10 Hb_021346_030 0.1004234248 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
11 Hb_000723_040 0.1027009608 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000804_040 0.105635626 - - protein with unknown function [Ricinus communis]
13 Hb_003029_070 0.1060569783 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004837_030 0.107165824 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
15 Hb_002217_260 0.1089967214 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
16 Hb_003440_060 0.1110927052 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
17 Hb_001489_050 0.111775862 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
18 Hb_163950_030 0.1125530116 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
19 Hb_000753_240 0.1136899611 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
20 Hb_002374_240 0.1140816965 - - nucellin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002163_040 Hb_002163_040 Hb_012022_150 Hb_012022_150 Hb_002163_040--Hb_012022_150 Hb_000080_120 Hb_000080_120 Hb_002163_040--Hb_000080_120 Hb_000224_160 Hb_000224_160 Hb_002163_040--Hb_000224_160 Hb_006117_040 Hb_006117_040 Hb_002163_040--Hb_006117_040 Hb_001584_200 Hb_001584_200 Hb_002163_040--Hb_001584_200 Hb_022693_140 Hb_022693_140 Hb_002163_040--Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_012022_150--Hb_000224_160 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_002893_070 Hb_002893_070 Hb_000080_120--Hb_002893_070 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_000080_120--Hb_012022_150 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_006117_040--Hb_000080_120 Hb_006117_040--Hb_002893_070 Hb_021346_030 Hb_021346_030 Hb_006117_040--Hb_021346_030 Hb_006117_040--Hb_000224_160 Hb_000134_310 Hb_000134_310 Hb_006117_040--Hb_000134_310 Hb_003376_230 Hb_003376_230 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580 Hb_022693_140--Hb_000804_040 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2731 5.48061 17.6909 6.60874 15.6596 18.9865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5047 18.6505 12.2741 5.76672 26.4328

CAGE analysis