Hb_001584_200

Information

Type -
Description -
Location Contig1584: 125537-127689
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01380g
description hypothetical protein
nr
ID XP_012088857.1
description PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
swissprot
ID Q8LEK2
description Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=1 SV=1
trembl
ID A0A067JKM5
description Golgi apparatus membrane protein TVP23 OS=Jatropha curcas GN=JCGZ_23196 PE=3 SV=1
Gene Ontology
ID GO:0000139
description golgi apparatus membrane protein echidna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13979: 125487-127132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_200 0.0 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
2 Hb_000224_160 0.0626317353 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_003376_230 0.0747029567 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
4 Hb_000462_090 0.0761406965 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
5 Hb_012022_150 0.0778450294 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
6 Hb_002374_240 0.0820370209 - - nucellin, putative [Ricinus communis]
7 Hb_000172_580 0.0833271266 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000184_170 0.0853749637 - - hypothetical protein RCOM_1213430 [Ricinus communis]
9 Hb_002496_020 0.0886876604 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002163_040 0.0905626709 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003153_010 0.0932226644 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
12 Hb_022693_140 0.0964793535 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
13 Hb_011716_130 0.0973085673 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
14 Hb_011512_110 0.0998071635 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000200_030 0.0999283303 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
16 Hb_000212_440 0.1017125281 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000181_240 0.1019149977 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
18 Hb_002217_260 0.1038412055 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
19 Hb_000080_120 0.1040554789 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
20 Hb_005405_020 0.1051725035 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_200 Hb_001584_200 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_003376_230 Hb_003376_230 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_003376_230--Hb_000172_580 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_000462_090--Hb_003376_230 Hb_012022_150--Hb_022693_140 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_002374_240--Hb_000184_170 Hb_002374_240--Hb_000224_160 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_007192_070 Hb_007192_070 Hb_000172_580--Hb_007192_070 Hb_005800_030 Hb_005800_030 Hb_000172_580--Hb_005800_030 Hb_002496_020 Hb_002496_020 Hb_000172_580--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_000172_580--Hb_002014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55107 1.08429 3.68513 2.61043 3.36173 3.18285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19009 3.45651 3.48835 1.65798 6.39676

CAGE analysis