Hb_003728_100

Information

Type transcription factor
Description TF Family: FAR1
Location Contig3728: 86016-87747
Sequence    

Annotation

kegg
ID rcu:RCOM_0452680
description hypothetical protein
nr
ID XP_002533358.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LKR4
description Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2
trembl
ID B9T539
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38084: 84627-86281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_100 0.0 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
2 Hb_009225_020 0.0623837965 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
3 Hb_000207_300 0.068257033 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
4 Hb_000221_140 0.0866007668 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_003462_070 0.0899330017 - - arsenical pump-driving atpase, putative [Ricinus communis]
6 Hb_001022_030 0.0907589592 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
7 Hb_005405_020 0.0918338708 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
8 Hb_107879_010 0.0918966853 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_006538_120 0.0952691788 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
10 Hb_000920_030 0.1001655285 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_004109_120 0.1006478607 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
12 Hb_000304_070 0.1032849146 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
13 Hb_005539_010 0.1036258752 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
14 Hb_000108_050 0.1045073463 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
15 Hb_029351_010 0.1045157851 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_012305_100 0.1056738314 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000212_440 0.1062267855 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002874_180 0.1078155832 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
19 Hb_001205_300 0.1081672419 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
20 Hb_000227_170 0.1107054265 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003728_100 Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_001022_030 Hb_001022_030 Hb_003728_100--Hb_001022_030 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_009225_020--Hb_000207_300 Hb_009225_020--Hb_005405_020 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_009225_020--Hb_000221_140 Hb_004109_120 Hb_004109_120 Hb_000207_300--Hb_004109_120 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_001824_080 Hb_001824_080 Hb_000207_300--Hb_001824_080 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_000221_140--Hb_005405_020 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_000740_050 Hb_000740_050 Hb_003462_070--Hb_000740_050 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_001022_030--Hb_009225_020 Hb_005405_020--Hb_000212_440 Hb_003376_230 Hb_003376_230 Hb_005405_020--Hb_003376_230 Hb_003153_010 Hb_003153_010 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45273 1.13205 5.49779 2.7312 1.99571 2.31032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2376 2.06327 1.60742 2.10499 4.99996

CAGE analysis