Hb_000539_050

Information

Type -
Description -
Location Contig539: 80413-93168
Sequence    

Annotation

kegg
ID rcu:RCOM_1086810
description bile acid:sodium symporter, putative
nr
ID XP_002524996.1
description bile acid:sodium symporter, putative [Ricinus communis]
swissprot
ID F4IZC4
description Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1
trembl
ID B9SG77
description Bile acid:sodium symporter, putative OS=Ricinus communis GN=RCOM_1086810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47741: 79258-93209
cDNA
(Sanger)
(ID:Location)		 049_F22.ab1: 90734-93209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000539_050 0.0 - - bile acid:sodium symporter, putative [Ricinus communis]
2 Hb_002218_030 0.0886590335 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
3 Hb_001022_030 0.0919783127 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
4 Hb_093666_010 0.1033788522 - - BnaC05g06620D [Brassica napus]
5 Hb_000907_180 0.1096849012 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
6 Hb_009225_020 0.1159179776 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
7 Hb_077549_010 0.1209370082 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
8 Hb_000608_380 0.1215969891 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001882_010 0.1236544312 - - -
10 Hb_001250_070 0.1236869054 - - ATP-citrate synthase, putative [Ricinus communis]
11 Hb_000579_120 0.1241910157 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
12 Hb_005015_060 0.1242615278 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
13 Hb_002471_250 0.1248419217 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
14 Hb_065525_080 0.1252965932 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
15 Hb_000046_330 0.1256086459 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
16 Hb_005054_220 0.1262638182 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_000959_030 0.1278852765 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000116_190 0.1288805573 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004452_120 0.1293825351 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
20 Hb_113853_010 0.1305710991 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000539_050 Hb_000539_050 Hb_002218_030 Hb_002218_030 Hb_000539_050--Hb_002218_030 Hb_001022_030 Hb_001022_030 Hb_000539_050--Hb_001022_030 Hb_093666_010 Hb_093666_010 Hb_000539_050--Hb_093666_010 Hb_000907_180 Hb_000907_180 Hb_000539_050--Hb_000907_180 Hb_009225_020 Hb_009225_020 Hb_000539_050--Hb_009225_020 Hb_077549_010 Hb_077549_010 Hb_000539_050--Hb_077549_010 Hb_002218_030--Hb_093666_010 Hb_002272_270 Hb_002272_270 Hb_002218_030--Hb_002272_270 Hb_000110_250 Hb_000110_250 Hb_002218_030--Hb_000110_250 Hb_002218_030--Hb_000907_180 Hb_113853_010 Hb_113853_010 Hb_002218_030--Hb_113853_010 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_003728_100 Hb_003728_100 Hb_001022_030--Hb_003728_100 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_001022_030--Hb_009225_020 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_003266_030 Hb_003266_030 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_005405_020 Hb_005405_020 Hb_009225_020--Hb_005405_020 Hb_003462_070 Hb_003462_070 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140 Hb_029584_040 Hb_029584_040 Hb_077549_010--Hb_029584_040 Hb_174865_040 Hb_174865_040 Hb_077549_010--Hb_174865_040 Hb_000291_180 Hb_000291_180 Hb_077549_010--Hb_000291_180 Hb_002400_320 Hb_002400_320 Hb_077549_010--Hb_002400_320 Hb_002316_140 Hb_002316_140 Hb_077549_010--Hb_002316_140 Hb_160271_010 Hb_160271_010 Hb_077549_010--Hb_160271_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985493 0.577552 2.56573 2.39781 0.758196 1.71469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84488 1.36918 0.410022 1.16022 2.11086

CAGE analysis