Hb_002400_320

Information

Type -
Description -
Location Contig2400: 240469-245161
Sequence    

Annotation

kegg
ID rcu:RCOM_0923270
description hypothetical protein
nr
ID XP_002515482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q03730
description Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1
trembl
ID B9RP13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized vacuolar membrane protein yml018c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25179: 240485-245100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008406_180 0.0871903031 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
3 Hb_005977_100 0.0900176962 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
4 Hb_000212_120 0.0939129274 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
5 Hb_005015_060 0.0939450033 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
6 Hb_004531_100 0.0954350835 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
7 Hb_000703_100 0.0986680749 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
8 Hb_029584_040 0.1008509724 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
9 Hb_000049_020 0.1021374217 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_001876_040 0.1023049531 - - PREDICTED: mucin-5B [Jatropha curcas]
11 Hb_000300_270 0.1029295136 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_001349_030 0.1031255497 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
13 Hb_024184_010 0.1039488839 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
14 Hb_077549_010 0.1052179682 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
15 Hb_002883_030 0.1053005151 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
16 Hb_001157_230 0.1067410256 - - Protein AFR, putative [Ricinus communis]
17 Hb_000160_070 0.108996164 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
18 Hb_000347_040 0.1122477119 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
19 Hb_004994_050 0.1127150687 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_002774_190 0.1129707782 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002400_320 Hb_002400_320 Hb_008406_180 Hb_008406_180 Hb_002400_320--Hb_008406_180 Hb_005977_100 Hb_005977_100 Hb_002400_320--Hb_005977_100 Hb_000212_120 Hb_000212_120 Hb_002400_320--Hb_000212_120 Hb_005015_060 Hb_005015_060 Hb_002400_320--Hb_005015_060 Hb_004531_100 Hb_004531_100 Hb_002400_320--Hb_004531_100 Hb_000703_100 Hb_000703_100 Hb_002400_320--Hb_000703_100 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_000890_230 Hb_000890_230 Hb_008406_180--Hb_000890_230 Hb_001157_230 Hb_001157_230 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080 Hb_005977_100--Hb_000049_020 Hb_007545_010 Hb_007545_010 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_001876_040 Hb_001876_040 Hb_000212_120--Hb_001876_040 Hb_000212_120--Hb_001157_230 Hb_032202_220 Hb_032202_220 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_002883_030 Hb_002883_030 Hb_000212_120--Hb_002883_030 Hb_000787_160 Hb_000787_160 Hb_005015_060--Hb_000787_160 Hb_005015_060--Hb_002883_030 Hb_015099_030 Hb_015099_030 Hb_005015_060--Hb_015099_030 Hb_001662_100 Hb_001662_100 Hb_005015_060--Hb_001662_100 Hb_001856_180 Hb_001856_180 Hb_005015_060--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_005015_060--Hb_000345_160 Hb_001541_150 Hb_001541_150 Hb_004531_100--Hb_001541_150 Hb_001776_020 Hb_001776_020 Hb_004531_100--Hb_001776_020 Hb_010315_020 Hb_010315_020 Hb_004531_100--Hb_010315_020 Hb_004531_100--Hb_002883_030 Hb_000336_020 Hb_000336_020 Hb_004531_100--Hb_000336_020 Hb_004531_100--Hb_000212_120 Hb_014361_060 Hb_014361_060 Hb_000703_100--Hb_014361_060 Hb_000703_100--Hb_008406_180 Hb_000922_300 Hb_000922_300 Hb_000703_100--Hb_000922_300 Hb_000665_190 Hb_000665_190 Hb_000703_100--Hb_000665_190 Hb_029584_040 Hb_029584_040 Hb_000703_100--Hb_029584_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47323 6.90347 9.45546 16.0102 6.86589 7.56635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8106 5.74692 2.42445 4.46047 12.279

CAGE analysis