Hb_000922_300

Information

Type -
Description -
Location Contig922: 256572-261247
Sequence    

Annotation

kegg
ID cmo:103494719
description GDSL esterase/lipase At5g62930
nr
ID XP_008454264.1
description PREDICTED: GDSL esterase/lipase At5g62930 isoform X1 [Cucumis melo]
swissprot
ID Q9FM04
description GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana GN=At5g62930 PE=2 SV=3
trembl
ID A0A067KGX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11465 PE=4 SV=1
Gene Ontology
ID GO:0005829
description gdsl esterase lipase at5g62930 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62500: 256595-261307 , PASA_asmbl_62501: 259220-259435 , PASA_asmbl_62502: 259946-260299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_300 0.0 - - PREDICTED: GDSL esterase/lipase At5g62930 isoform X1 [Cucumis melo]
2 Hb_008406_180 0.0920814571 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
3 Hb_000787_060 0.1047517991 - - thioredoxin domain-containing protein, putative [Ricinus communis]
4 Hb_000139_530 0.1108602513 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000890_230 0.1173689424 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
6 Hb_004994_050 0.1183396678 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
7 Hb_011486_040 0.1186192597 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
8 Hb_030736_020 0.1210829054 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000703_100 0.1219735907 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
10 Hb_000056_130 0.122177028 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
11 Hb_000002_480 0.12273315 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_002400_320 0.1227403252 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000579_120 0.1242805595 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
14 Hb_001512_040 0.1246742506 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_002749_080 0.1250764847 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009661_030 0.125225086 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
17 Hb_000371_090 0.1256213953 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
18 Hb_001002_060 0.1266651298 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
19 Hb_001269_330 0.1269750666 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_000058_130 0.1273502949 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_300 Hb_000922_300 Hb_008406_180 Hb_008406_180 Hb_000922_300--Hb_008406_180 Hb_000787_060 Hb_000787_060 Hb_000922_300--Hb_000787_060 Hb_000139_530 Hb_000139_530 Hb_000922_300--Hb_000139_530 Hb_000890_230 Hb_000890_230 Hb_000922_300--Hb_000890_230 Hb_004994_050 Hb_004994_050 Hb_000922_300--Hb_004994_050 Hb_011486_040 Hb_011486_040 Hb_000922_300--Hb_011486_040 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_008406_180--Hb_000890_230 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_001157_230 Hb_001157_230 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080 Hb_001002_060 Hb_001002_060 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000903_010 Hb_000903_010 Hb_000787_060--Hb_000903_010 Hb_002749_080 Hb_002749_080 Hb_000787_060--Hb_002749_080 Hb_000007_390 Hb_000007_390 Hb_000787_060--Hb_000007_390 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070 Hb_005797_010 Hb_005797_010 Hb_000139_530--Hb_005797_010 Hb_086639_080 Hb_086639_080 Hb_000139_530--Hb_086639_080 Hb_011214_160 Hb_011214_160 Hb_000139_530--Hb_011214_160 Hb_001087_030 Hb_001087_030 Hb_000139_530--Hb_001087_030 Hb_000009_400 Hb_000009_400 Hb_000139_530--Hb_000009_400 Hb_004102_170 Hb_004102_170 Hb_000139_530--Hb_004102_170 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_004531_140 Hb_004531_140 Hb_004994_050--Hb_004531_140 Hb_007919_100 Hb_007919_100 Hb_004994_050--Hb_007919_100 Hb_000579_120 Hb_000579_120 Hb_004994_050--Hb_000579_120 Hb_002947_030 Hb_002947_030 Hb_004994_050--Hb_002947_030 Hb_002073_190 Hb_002073_190 Hb_004994_050--Hb_002073_190 Hb_132840_110 Hb_132840_110 Hb_004994_050--Hb_132840_110 Hb_011486_040--Hb_004531_140 Hb_152202_010 Hb_152202_010 Hb_011486_040--Hb_152202_010 Hb_001898_210 Hb_001898_210 Hb_011486_040--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_011486_040--Hb_001640_030 Hb_002496_020 Hb_002496_020 Hb_011486_040--Hb_002496_020 Hb_000370_020 Hb_000370_020 Hb_011486_040--Hb_000370_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3252 4.71465 14.5637 27.522 16.5599 10.7676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4422 7.74132 6.06726 7.99419 15.667

CAGE analysis