Hb_000787_060

Information

Type -
Description -
Location Contig787: 88786-103201
Sequence    

Annotation

kegg
ID rcu:RCOM_0185010
description thioredoxin domain-containing protein, putative (EC:5.3.4.1)
nr
ID XP_002522864.1
description thioredoxin domain-containing protein, putative [Ricinus communis]
swissprot
ID Q69SA9
description Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1
trembl
ID B9SA45
description Thioredoxin domain-containing protein, putative OS=Ricinus communis GN=RCOM_0185010 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein disulfide-isomerase 5-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58120: 88830-103218 , PASA_asmbl_58121: 95227-95457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_060 0.0 - - thioredoxin domain-containing protein, putative [Ricinus communis]
2 Hb_001002_060 0.079069091 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
3 Hb_000163_090 0.0813929469 - - gamma-tubulin complex component, putative [Ricinus communis]
4 Hb_000903_010 0.0819963595 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
5 Hb_002749_080 0.0825681371 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000007_390 0.0852886501 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
7 Hb_000184_070 0.088301545 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
8 Hb_000101_080 0.0903389112 - - PREDICTED: protein CREG1 [Jatropha curcas]
9 Hb_000056_160 0.0915652087 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
10 Hb_002351_030 0.0932180391 - - catalytic, putative [Ricinus communis]
11 Hb_001188_070 0.0943368649 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
12 Hb_079526_040 0.0947195504 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
13 Hb_002073_190 0.0949768494 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
14 Hb_000579_070 0.0958723014 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
15 Hb_000261_210 0.0962063363 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_000058_130 0.097221921 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_002301_300 0.0983899688 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
18 Hb_000579_120 0.0985082593 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
19 Hb_000006_010 0.0986045153 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023313_040 0.098858993 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_060 Hb_000787_060 Hb_001002_060 Hb_001002_060 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000903_010 Hb_000903_010 Hb_000787_060--Hb_000903_010 Hb_002749_080 Hb_002749_080 Hb_000787_060--Hb_002749_080 Hb_000007_390 Hb_000007_390 Hb_000787_060--Hb_000007_390 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001789_030 Hb_001789_030 Hb_000163_090--Hb_001789_030 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_000163_090--Hb_000184_070 Hb_030982_010 Hb_030982_010 Hb_000163_090--Hb_030982_010 Hb_002837_040 Hb_002837_040 Hb_000903_010--Hb_002837_040 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_002871_140 Hb_002871_140 Hb_000903_010--Hb_002871_140 Hb_000903_010--Hb_002749_080 Hb_000903_010--Hb_001002_060 Hb_002749_080--Hb_002837_040 Hb_002749_080--Hb_002871_140 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_000270_680 Hb_000270_680 Hb_000007_390--Hb_000270_680 Hb_003943_050 Hb_003943_050 Hb_000007_390--Hb_003943_050 Hb_000110_310 Hb_000110_310 Hb_000007_390--Hb_000110_310 Hb_001268_240 Hb_001268_240 Hb_000007_390--Hb_001268_240 Hb_009898_050 Hb_009898_050 Hb_000007_390--Hb_009898_050 Hb_000352_300 Hb_000352_300 Hb_000184_070--Hb_000352_300 Hb_000184_070--Hb_001789_030 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8732 5.26269 20.3386 20.4861 16.3284 13.2512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31637 8.92261 7.9857 13.5018 15.6015

CAGE analysis