Hb_002749_080

Information

Type -
Description -
Location Contig2749: 59543-64034
Sequence    

Annotation

kegg
ID rcu:RCOM_0106290
description hypothetical protein
nr
ID XP_002524526.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0106290 PE=4 SV=1
Gene Ontology
ID GO:0000394
description nhl domain-containing protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28797: 59733-63997
cDNA
(Sanger)
(ID:Location)		 009_K23r.ab1: 62851-63662

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002837_040 0.081639155 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_000787_060 0.0825681371 - - thioredoxin domain-containing protein, putative [Ricinus communis]
4 Hb_000903_010 0.0829695741 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
5 Hb_002871_140 0.0862947037 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
6 Hb_000579_070 0.0877528908 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
7 Hb_000056_160 0.0922751984 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
8 Hb_000645_070 0.0938451826 - - aldehyde dehydrogenase, putative [Ricinus communis]
9 Hb_004096_060 0.0992971997 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
10 Hb_000261_210 0.1011894098 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_000634_020 0.1018401387 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
12 Hb_000154_050 0.1033924343 - - CMP-sialic acid transporter, putative [Ricinus communis]
13 Hb_004064_040 0.1045264117 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
14 Hb_003687_210 0.107219217 - - PREDICTED: malate dehydrogenase [Populus euphratica]
15 Hb_000184_070 0.1103718457 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
16 Hb_000140_450 0.1108050915 - - PREDICTED: calreticulin-3-like [Populus euphratica]
17 Hb_001981_040 0.1115601823 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
18 Hb_001002_060 0.1116692215 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
19 Hb_005064_010 0.1126684357 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
20 Hb_033642_040 0.1127592586 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002749_080 Hb_002749_080 Hb_002837_040 Hb_002837_040 Hb_002749_080--Hb_002837_040 Hb_000787_060 Hb_000787_060 Hb_002749_080--Hb_000787_060 Hb_000903_010 Hb_000903_010 Hb_002749_080--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_002749_080--Hb_002871_140 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_002837_040--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_001002_060 Hb_001002_060 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000787_060--Hb_000903_010 Hb_000007_390 Hb_000007_390 Hb_000787_060--Hb_000007_390 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_000903_010--Hb_002871_140 Hb_000903_010--Hb_001002_060 Hb_002871_140--Hb_000154_050 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_000579_070--Hb_000056_160 Hb_003687_210 Hb_003687_210 Hb_000579_070--Hb_003687_210 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000261_210 Hb_000261_210 Hb_000579_070--Hb_000261_210 Hb_000579_070--Hb_000787_060 Hb_000056_160--Hb_003687_210 Hb_000056_160--Hb_000261_210 Hb_000056_160--Hb_004064_040 Hb_000056_160--Hb_000154_050 Hb_000056_160--Hb_001002_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05798 2.5254 12.175 13.5214 8.31096 7.43484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37558 2.79623 3.18274 9.02363 10.3459

CAGE analysis