Hb_003687_210

Information

Type -
Description -
Location Contig3687: 146463-150480
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16670g
description POPTRDRAFT_564942; cytosolic malate dehydrogenase family protein
nr
ID XP_011029826.1
description PREDICTED: malate dehydrogenase [Populus euphratica]
swissprot
ID O48905
description Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1
trembl
ID A0A067KZE2
description Malate dehydrogenase OS=Jatropha curcas GN=JCGZ_02331 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37939: 144963-145833 , PASA_asmbl_37940: 146523-150284 , PASA_asmbl_37941: 146525-150284
cDNA
(Sanger)
(ID:Location)		 013_A07.ab1: 146569-149291 , 047_D14.ab1: 146523-149291 , 049_P10.ab1: 146569-149133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_210 0.0 - - PREDICTED: malate dehydrogenase [Populus euphratica]
2 Hb_000056_160 0.0680730347 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
3 Hb_000579_070 0.0777452869 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
4 Hb_000579_060 0.0892508313 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
5 Hb_003104_040 0.092964337 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
6 Hb_013726_080 0.1013347289 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
7 Hb_004096_060 0.1030330027 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
8 Hb_000608_350 0.1037200653 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
9 Hb_000640_070 0.1044201154 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
10 Hb_002749_080 0.107219217 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007951_040 0.1072264511 - - signal peptidase family protein [Populus trichocarpa]
12 Hb_003688_090 0.1097414761 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
13 Hb_000154_050 0.1098511932 - - CMP-sialic acid transporter, putative [Ricinus communis]
14 Hb_001002_060 0.111411675 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
15 Hb_002805_060 0.1115037424 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
16 Hb_000487_180 0.1127587691 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
17 Hb_002871_140 0.1132416965 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
18 Hb_005895_010 0.1138003788 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
19 Hb_003398_100 0.1144871101 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000362_170 0.1152534377 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]

Gene co-expression network

sample Hb_003687_210 Hb_003687_210 Hb_000056_160 Hb_000056_160 Hb_003687_210--Hb_000056_160 Hb_000579_070 Hb_000579_070 Hb_003687_210--Hb_000579_070 Hb_000579_060 Hb_000579_060 Hb_003687_210--Hb_000579_060 Hb_003104_040 Hb_003104_040 Hb_003687_210--Hb_003104_040 Hb_013726_080 Hb_013726_080 Hb_003687_210--Hb_013726_080 Hb_004096_060 Hb_004096_060 Hb_003687_210--Hb_004096_060 Hb_000056_160--Hb_000579_070 Hb_000261_210 Hb_000261_210 Hb_000056_160--Hb_000261_210 Hb_004064_040 Hb_004064_040 Hb_000056_160--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_000056_160--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_000056_160--Hb_001002_060 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_006831_070 Hb_006831_070 Hb_000579_060--Hb_006831_070 Hb_000608_350 Hb_000608_350 Hb_000579_060--Hb_000608_350 Hb_000579_060--Hb_000056_160 Hb_000599_170 Hb_000599_170 Hb_000579_060--Hb_000599_170 Hb_000579_060--Hb_000579_070 Hb_073973_150 Hb_073973_150 Hb_003104_040--Hb_073973_150 Hb_012215_010 Hb_012215_010 Hb_003104_040--Hb_012215_010 Hb_005053_010 Hb_005053_010 Hb_003104_040--Hb_005053_010 Hb_010272_010 Hb_010272_010 Hb_003104_040--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_003104_040--Hb_000640_070 Hb_002539_110 Hb_002539_110 Hb_003104_040--Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090 Hb_004032_370 Hb_004032_370 Hb_004096_060--Hb_004032_370 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_025668_010 Hb_025668_010 Hb_004096_060--Hb_025668_010 Hb_000724_020 Hb_000724_020 Hb_004096_060--Hb_000724_020 Hb_004096_060--Hb_001002_060 Hb_002326_110 Hb_002326_110 Hb_004096_060--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
201.86 111.597 378.226 307.178 285.653 288.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.01 66.0417 65.3787 202.065 182.85

CAGE analysis