Hb_006831_070

Information

Type -
Description -
Location Contig6831: 28223-32848
Sequence    

Annotation

kegg
ID rcu:RCOM_0820390
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012082219.1
description PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
swissprot
ID Q93ZX7
description Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1
trembl
ID A0A067KB27
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_16418 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53915: 27258-27574 , PASA_asmbl_53916: 28254-32763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_070 0.0 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
2 Hb_000579_060 0.0936661371 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
3 Hb_000608_350 0.1048435412 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
4 Hb_000599_170 0.1062383495 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
5 Hb_008511_060 0.1097187451 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_003894_040 0.1177050018 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_007380_140 0.1190220328 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
8 Hb_027380_030 0.1201534973 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
9 Hb_002805_060 0.1203157046 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
10 Hb_006915_020 0.1259768424 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
11 Hb_048476_150 0.1273666142 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
12 Hb_000165_140 0.1329917393 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
13 Hb_003687_210 0.13512377 - - PREDICTED: malate dehydrogenase [Populus euphratica]
14 Hb_000021_020 0.1352399473 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
15 Hb_001486_170 0.13568298 - - PREDICTED: syntaxin-132 [Jatropha curcas]
16 Hb_013726_080 0.1390909557 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
17 Hb_002054_050 0.1396616832 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
18 Hb_000684_080 0.1406430357 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
19 Hb_004631_190 0.1425556337 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_000959_250 0.1430992799 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_006831_070 Hb_006831_070 Hb_000579_060 Hb_000579_060 Hb_006831_070--Hb_000579_060 Hb_000608_350 Hb_000608_350 Hb_006831_070--Hb_000608_350 Hb_000599_170 Hb_000599_170 Hb_006831_070--Hb_000599_170 Hb_008511_060 Hb_008511_060 Hb_006831_070--Hb_008511_060 Hb_003894_040 Hb_003894_040 Hb_006831_070--Hb_003894_040 Hb_007380_140 Hb_007380_140 Hb_006831_070--Hb_007380_140 Hb_003687_210 Hb_003687_210 Hb_000579_060--Hb_003687_210 Hb_000579_060--Hb_000608_350 Hb_000056_160 Hb_000056_160 Hb_000579_060--Hb_000056_160 Hb_000579_060--Hb_000599_170 Hb_000579_070 Hb_000579_070 Hb_000579_060--Hb_000579_070 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_027380_030 Hb_027380_030 Hb_000599_170--Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_000599_170--Hb_002805_060 Hb_000599_170--Hb_003894_040 Hb_001051_090 Hb_001051_090 Hb_000599_170--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_000599_170--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_000599_170--Hb_002092_100 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_008511_060--Hb_000608_350 Hb_003894_040--Hb_002805_060 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_003894_040--Hb_006915_020 Hb_142218_020 Hb_142218_020 Hb_007380_140--Hb_142218_020 Hb_002686_040 Hb_002686_040 Hb_007380_140--Hb_002686_040 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210 Hb_158604_010 Hb_158604_010 Hb_007380_140--Hb_158604_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7406 13.3248 30.7588 23.8524 24.3617 22.7655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01838 3.52077 8.923 13.8662 6.50141

CAGE analysis