Hb_009393_200

Information

Type -
Description -
Location Contig9393: 143466-144836
Sequence    

Annotation

kegg
ID rcu:RCOM_0708190
description ubiquitin-protein ligase, putative
nr
ID XP_012077154.1
description PREDICTED: F-box only protein 13 [Jatropha curcas]
swissprot
ID Q9SMZ3
description F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2
trembl
ID A0A067KCY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07568 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box only protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_200 0.0 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
2 Hb_000122_010 0.1045901043 - - amino acid transporter, putative [Ricinus communis]
3 Hb_009222_070 0.1049720898 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
4 Hb_010053_040 0.1167527759 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
5 Hb_008511_060 0.1195636579 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_004374_130 0.1348576521 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_000637_140 0.1382489038 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
8 Hb_073171_090 0.1386438246 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
9 Hb_000059_200 0.1426721606 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
10 Hb_007163_060 0.143148746 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
11 Hb_086022_010 0.1514369583 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
12 Hb_004935_080 0.1541722928 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
13 Hb_002217_380 0.1546986254 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
14 Hb_000608_350 0.1555524122 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
15 Hb_000179_180 0.1562532017 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
16 Hb_000805_210 0.1597770472 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
17 Hb_000735_050 0.1600728266 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
18 Hb_145317_010 0.1603700558 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
19 Hb_000438_090 0.160813734 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
20 Hb_000589_060 0.1627135285 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]

Gene co-expression network

sample Hb_009393_200 Hb_009393_200 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_000122_010--Hb_007163_060 Hb_000122_010--Hb_008511_060 Hb_000122_010--Hb_010053_040 Hb_005656_080 Hb_005656_080 Hb_000122_010--Hb_005656_080 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_083628_010 Hb_083628_010 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_001623_110 Hb_001623_110 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_000735_050 Hb_000735_050 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_003891_070 Hb_003891_070 Hb_010053_040--Hb_003891_070 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_004374_130--Hb_083628_010 Hb_000637_140--Hb_000608_350 Hb_007800_020 Hb_007800_020 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_000637_140--Hb_003038_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53739 3.45815 5.11013 6.26365 2.64112 3.67828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03982 0.654411 0.561469 0.806469 0.965894

CAGE analysis