Hb_004374_130

Information

Type -
Description -
Location Contig4374: 123084-123563
Sequence    

Annotation

kegg
ID rcu:RCOM_1687660
description zinc finger protein, putative
nr
ID XP_012086847.1
description PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
swissprot
ID Q9SUS5
description E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1
trembl
ID A0A067JRF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20559 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rha1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42510: 123014-123868
cDNA
(Sanger)
(ID:Location)		 012_B22.ab1: 123150-123668 , 041_M04.ab1: 123152-123668 , 053_F11.ab1: 123152-123834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_130 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
2 Hb_009189_020 0.1200407371 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
3 Hb_009393_200 0.1348576521 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
4 Hb_008054_050 0.1381849797 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
5 Hb_009222_070 0.1419687232 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
6 Hb_145317_010 0.1549146291 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
7 Hb_083628_010 0.1572522335 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
8 Hb_086022_010 0.1603007401 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
9 Hb_004738_030 0.1693224142 - - Inactive protein kinase [Gossypium arboreum]
10 Hb_001882_110 0.1714569793 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_008511_060 0.1719783773 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
12 Hb_000844_030 0.1802147498 - - ent-kaurene oxidase, putative [Ricinus communis]
13 Hb_000805_210 0.1811073335 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
14 Hb_008119_030 0.1811137777 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
15 Hb_002217_380 0.1818447451 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
16 Hb_002498_050 0.1819495942 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
17 Hb_001623_110 0.1823595431 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
18 Hb_000637_140 0.1853185924 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_007163_060 0.185626676 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
20 Hb_004223_110 0.1869873004 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]

Gene co-expression network

sample Hb_004374_130 Hb_004374_130 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_009393_200 Hb_009393_200 Hb_004374_130--Hb_009393_200 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_009222_070 Hb_009222_070 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_004466_040 Hb_004466_040 Hb_009189_020--Hb_004466_040 Hb_009189_020--Hb_083628_010 Hb_086022_010 Hb_086022_010 Hb_009189_020--Hb_086022_010 Hb_009189_020--Hb_009222_070 Hb_000608_110 Hb_000608_110 Hb_009189_020--Hb_000608_110 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_008054_050--Hb_145317_010 Hb_161994_040 Hb_161994_040 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_001623_110 Hb_001623_110 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_145317_010--Hb_009393_200 Hb_083628_010--Hb_000805_210 Hb_164945_010 Hb_164945_010 Hb_083628_010--Hb_164945_010 Hb_083628_010--Hb_001623_110 Hb_000836_300 Hb_000836_300 Hb_083628_010--Hb_000836_300 Hb_012760_030 Hb_012760_030 Hb_083628_010--Hb_012760_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8311 20.8015 30.9325 60.4701 32.2238 20.0538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87833 6.65746 3.22154 5.03958 7.5227

CAGE analysis