Hb_154538_010

Information

Type -
Description -
Location Contig154538: 158-594
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154538_010 0.0 - - -
2 Hb_145317_010 0.1428125789 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
3 Hb_017159_010 0.15171244 - - -
4 Hb_001178_040 0.1569107145 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
5 Hb_000342_140 0.1599803335 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
6 Hb_001754_060 0.1726632002 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
7 Hb_040747_010 0.1727497076 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
8 Hb_002250_050 0.1758994259 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
9 Hb_106688_010 0.1760204922 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
10 Hb_007441_090 0.1815501463 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
11 Hb_091675_010 0.1824478918 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
12 Hb_035761_010 0.1854387162 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
13 Hb_000732_240 0.1867683046 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
14 Hb_001103_070 0.1933041509 - - Patellin-3, putative [Ricinus communis]
15 Hb_003637_020 0.1943944773 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000099_190 0.1950645155 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
17 Hb_003090_160 0.1975956488 - - -
18 Hb_009247_010 0.2013540598 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_001357_280 0.2063185491 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
20 Hb_002685_030 0.2074495 - - PREDICTED: protein SMG7L [Jatropha curcas]

Gene co-expression network

sample Hb_154538_010 Hb_154538_010 Hb_145317_010 Hb_145317_010 Hb_154538_010--Hb_145317_010 Hb_017159_010 Hb_017159_010 Hb_154538_010--Hb_017159_010 Hb_001178_040 Hb_001178_040 Hb_154538_010--Hb_001178_040 Hb_000342_140 Hb_000342_140 Hb_154538_010--Hb_000342_140 Hb_001754_060 Hb_001754_060 Hb_154538_010--Hb_001754_060 Hb_040747_010 Hb_040747_010 Hb_154538_010--Hb_040747_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_001699_030 Hb_001699_030 Hb_001178_040--Hb_001699_030 Hb_003175_090 Hb_003175_090 Hb_001178_040--Hb_003175_090 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_001178_040--Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_001178_040--Hb_003637_020 Hb_000342_140--Hb_003637_020 Hb_006185_010 Hb_006185_010 Hb_000342_140--Hb_006185_010 Hb_000342_140--Hb_017159_010 Hb_003082_040 Hb_003082_040 Hb_000342_140--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000342_140--Hb_001278_040 Hb_002289_150 Hb_002289_150 Hb_001754_060--Hb_002289_150 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000797_060 Hb_000797_060 Hb_001754_060--Hb_000797_060 Hb_000523_030 Hb_000523_030 Hb_001754_060--Hb_000523_030 Hb_040747_010--Hb_106688_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_040747_010--Hb_145317_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8582 56.4723 21.4255 67.2351 8.52913 35.2431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21825 1.92502 3.09381 8.15189 11.4864

CAGE analysis