Hb_106688_010

Information

Type -
Description -
Location Contig106688: 1222-1485
Sequence    

Annotation

kegg
ID rcu:RCOM_1043210
description aspartyl-tRNA synthetase, putative (EC:6.1.1.12)
nr
ID XP_002523450.1
description aspartyl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q75JQ1
description Aspartate--tRNA ligase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1
trembl
ID B9SBT1
description Aspartyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_1043210 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106688_010 0.0 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
2 Hb_165402_010 0.1167967038 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
3 Hb_007441_090 0.125052808 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
4 Hb_077573_010 0.1375796364 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_040747_010 0.1403069323 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
6 Hb_145317_010 0.140578766 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
7 Hb_009247_010 0.1492783567 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_181441_010 0.1682548184 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
9 Hb_005539_310 0.1687452988 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
10 Hb_018691_010 0.1757711407 - - -
11 Hb_154538_010 0.1760204922 - - -
12 Hb_075764_010 0.1780404841 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
13 Hb_005686_120 0.1787343884 - - -
14 Hb_001708_010 0.1826517503 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
15 Hb_146675_010 0.1837539009 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
16 Hb_008054_050 0.1844901716 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
17 Hb_091675_010 0.1861290968 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
18 Hb_002250_050 0.1862555177 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
19 Hb_001278_040 0.1880413822 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
20 Hb_000116_150 0.1901956337 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_106688_010 Hb_106688_010 Hb_165402_010 Hb_165402_010 Hb_106688_010--Hb_165402_010 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_165402_010--Hb_077573_010 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_066514_010 Hb_066514_010 Hb_007441_090--Hb_066514_010 Hb_007441_090--Hb_165402_010 Hb_018691_010 Hb_018691_010 Hb_007441_090--Hb_018691_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_001708_010 Hb_001708_010 Hb_007441_090--Hb_001708_010 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_099878_050 Hb_099878_050 Hb_077573_010--Hb_099878_050 Hb_077573_010--Hb_181441_010 Hb_077573_010--Hb_009247_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_040747_010--Hb_077573_010 Hb_040747_010--Hb_145317_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_145317_010--Hb_009247_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8135 206.815 119.315 436.495 74.1541 255.754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6391 43.1999 34.3135 101.829 24.4202

CAGE analysis