Hb_007441_090

Information

Type -
Description -
Location Contig7441: 46907-49116
Sequence    

Annotation

kegg
ID tcc:TCM_005727
description Nucleoside diphosphate kinase family protein
nr
ID ADR30796.1
description nucleoside diphosphate kinase 1 [Hevea brasiliensis]
swissprot
ID P47920
description Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1
trembl
ID I1SN93
description Nucleoside diphosphate kinase OS=Hevea brasiliensis GN=NDK1 PE=2 SV=1
Gene Ontology
ID GO:0004550
description nucleoside diphosphate kinase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56598: 46952-49266 , PASA_asmbl_56599: 48732-48962
cDNA
(Sanger)
(ID:Location)		 001_H20.ab1: 47002-49216 , 002_L18.ab1: 47025-49266 , 021_M01.ab1: 47017-49216 , 032_E23.ab1: 47080-49209 , 050_O03.ab1: 47136-49266 , 053_O15.ab1: 47161-49214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_090 0.0 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
2 Hb_106688_010 0.125052808 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
3 Hb_066514_010 0.1408405521 - - hypothetical protein RCOM_0204720 [Ricinus communis]
4 Hb_165402_010 0.1582461335 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
5 Hb_018691_010 0.1693425841 - - -
6 Hb_017159_010 0.1734409674 - - -
7 Hb_001708_010 0.1776701434 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
8 Hb_002900_100 0.1781128805 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
9 Hb_154538_010 0.1815501463 - - -
10 Hb_011918_010 0.1840301502 - - hypothetical protein glysoja_041948 [Glycine soja]
11 Hb_145317_010 0.1850889065 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
12 Hb_004525_080 0.1855784704 - - Sugar transporter ERD6-like 6 [Morus notabilis]
13 Hb_004631_170 0.1891876812 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003740_040 0.1898469253 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
15 Hb_077573_010 0.1969322387 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002250_050 0.1975314868 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
17 Hb_155541_020 0.2009522241 - - -
18 Hb_160405_010 0.2013392576 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_040747_010 0.2017183055 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
20 Hb_009247_010 0.2030709857 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_090 Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_007441_090--Hb_106688_010 Hb_066514_010 Hb_066514_010 Hb_007441_090--Hb_066514_010 Hb_165402_010 Hb_165402_010 Hb_007441_090--Hb_165402_010 Hb_018691_010 Hb_018691_010 Hb_007441_090--Hb_018691_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_001708_010 Hb_001708_010 Hb_007441_090--Hb_001708_010 Hb_106688_010--Hb_165402_010 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_165402_010--Hb_077573_010 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_018691_010--Hb_106688_010 Hb_018691_010--Hb_077573_010 Hb_018691_010--Hb_165402_010 Hb_177152_010 Hb_177152_010 Hb_018691_010--Hb_177152_010 Hb_018691_010--Hb_145317_010 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_003740_040 Hb_003740_040 Hb_001708_010--Hb_003740_040 Hb_157968_010 Hb_157968_010 Hb_001708_010--Hb_157968_010 Hb_048183_010 Hb_048183_010 Hb_001708_010--Hb_048183_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1006 93.0723 68.4583 291.491 17.065 111.804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2465 16.7264 7.27745 50.7819 22.1118

CAGE analysis