Hb_011918_010

Information

Type -
Description -
Location Contig11918: 24214-24435
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014437mg
description hypothetical protein
nr
ID KHN45262.1
description hypothetical protein glysoja_041948 [Glycine soja]
swissprot
ID -
description -
trembl
ID I1KJ78
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05668: 23885-24447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011918_010 0.0 - - hypothetical protein glysoja_041948 [Glycine soja]
2 Hb_007575_090 0.1077357776 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
3 Hb_066514_010 0.1205155914 - - hypothetical protein RCOM_0204720 [Ricinus communis]
4 Hb_184541_010 0.1303487357 - - PREDICTED: selT-like protein [Jatropha curcas]
5 Hb_002900_100 0.1394476799 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
6 Hb_004125_070 0.1518931856 - - Glycolipid transfer protein, putative [Ricinus communis]
7 Hb_002490_030 0.1544061348 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008185_020 0.1587235073 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
9 Hb_000816_190 0.1669434572 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007741_090 0.1703402805 - - Autophagy-related 8f -like protein [Gossypium arboreum]
11 Hb_000302_100 0.1770640119 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
12 Hb_002272_200 0.1788404588 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
13 Hb_000311_040 0.181650119 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
14 Hb_007441_090 0.1840301502 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
15 Hb_053709_040 0.1845192756 - - putative actin-97 protein [Linum usitatissimum]
16 Hb_054865_160 0.1857376693 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
17 Hb_004117_330 0.1897135356 - - conserved hypothetical protein [Ricinus communis]
18 Hb_188313_010 0.1899610715 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_001195_410 0.1921385337 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
20 Hb_186647_010 0.1934288242 - - -

Gene co-expression network

sample Hb_011918_010 Hb_011918_010 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_066514_010 Hb_066514_010 Hb_011918_010--Hb_066514_010 Hb_184541_010 Hb_184541_010 Hb_011918_010--Hb_184541_010 Hb_002900_100 Hb_002900_100 Hb_011918_010--Hb_002900_100 Hb_004125_070 Hb_004125_070 Hb_011918_010--Hb_004125_070 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_007575_090--Hb_066514_010 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_066514_010--Hb_002900_100 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_184541_010--Hb_004125_070 Hb_188313_010 Hb_188313_010 Hb_184541_010--Hb_188313_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_009083_030 Hb_009083_030 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_002900_100--Hb_002490_030 Hb_000816_190 Hb_000816_190 Hb_002900_100--Hb_000816_190 Hb_002675_090 Hb_002675_090 Hb_002900_100--Hb_002675_090 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_001247_030 Hb_001247_030 Hb_004125_070--Hb_001247_030 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5547 114.57 127.662 793.472 37.9119 107.092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.2807 31.0548 37.9757 74.4032 39.0671

CAGE analysis