Hb_001247_030

Information

Type -
Description -
Location Contig1247: 12703-14031
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07467: 12729-13677 , PASA_asmbl_07468: 13094-13394 , PASA_asmbl_07469: 14932-30449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_030 0.0 - - -
2 Hb_188313_010 0.1250216313 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_004125_070 0.1386128815 - - Glycolipid transfer protein, putative [Ricinus communis]
4 Hb_000028_260 0.1434300527 - - hypothetical protein glysoja_041948 [Glycine soja]
5 Hb_008185_020 0.1458264474 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_184541_010 0.1587501062 - - PREDICTED: selT-like protein [Jatropha curcas]
7 Hb_004079_050 0.1602654852 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
8 Hb_182713_020 0.171806688 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
9 Hb_001217_010 0.1969452889 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
10 Hb_034507_040 0.1989387953 - - peptide transporter, putative [Ricinus communis]
11 Hb_099298_010 0.2001352253 - - -
12 Hb_011918_010 0.2006206782 - - hypothetical protein glysoja_041948 [Glycine soja]
13 Hb_000311_040 0.2028334011 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
14 Hb_000483_400 0.2045683854 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
15 Hb_009083_030 0.2050956954 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
16 Hb_030992_010 0.2082589385 - - acetylornithine aminotransferase, putative [Ricinus communis]
17 Hb_122636_010 0.2105195921 - - dienelactone hydrolase family protein [Populus trichocarpa]
18 Hb_054865_160 0.211352235 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
19 Hb_000796_020 0.2123679267 - - ADP-ribosylation factor [Phaseolus vulgaris]
20 Hb_006634_110 0.2136504627 - - BnaC04g40780D [Brassica napus]

Gene co-expression network

sample Hb_001247_030 Hb_001247_030 Hb_188313_010 Hb_188313_010 Hb_001247_030--Hb_188313_010 Hb_004125_070 Hb_004125_070 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_188313_010--Hb_100137_010 Hb_004125_070--Hb_184541_010 Hb_011918_010 Hb_011918_010 Hb_004125_070--Hb_011918_010 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_000028_260--Hb_004125_070 Hb_000649_340 Hb_000649_340 Hb_000028_260--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000028_260--Hb_000483_400 Hb_000157_050 Hb_000157_050 Hb_000028_260--Hb_000157_050 Hb_000796_020 Hb_000796_020 Hb_000028_260--Hb_000796_020 Hb_008185_020--Hb_184541_010 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_184541_010--Hb_011918_010 Hb_184541_010--Hb_009083_030 Hb_184541_010--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_178968_040 Hb_178968_040 Hb_004079_050--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_004079_050--Hb_017002_010 Hb_122636_010 Hb_122636_010 Hb_004079_050--Hb_122636_010 Hb_004079_050--Hb_188313_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63997 2.53034 6.15674 68.1852 1.38583 10.5721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26671 9.41596 4.83772 2.12409 2.5158

CAGE analysis