Hb_004079_050

Information

Type -
Description -
Location Contig4079: 43550-43792
Sequence    

Annotation

kegg
ID pop:POPTR_0006s16210g
description hypothetical protein
nr
ID KDP33658.1
description hypothetical protein JCGZ_07229 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07229 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_050 0.0 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
2 Hb_001247_030 0.1602654852 - - -
3 Hb_006634_110 0.1695308034 - - BnaC04g40780D [Brassica napus]
4 Hb_178968_040 0.1851057468 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017002_010 0.1851928666 - - PREDICTED: expansin-A15-like [Jatropha curcas]
6 Hb_122636_010 0.1942295619 - - dienelactone hydrolase family protein [Populus trichocarpa]
7 Hb_188313_010 0.1966375734 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
8 Hb_184541_010 0.1983195374 - - PREDICTED: selT-like protein [Jatropha curcas]
9 Hb_004125_070 0.1993477415 - - Glycolipid transfer protein, putative [Ricinus communis]
10 Hb_008185_020 0.2040716996 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_010984_040 0.2059425907 - - hypothetical protein M569_17286, partial [Genlisea aurea]
12 Hb_008695_220 0.207311816 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
13 Hb_010577_010 0.2103779277 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
14 Hb_121694_010 0.211041422 - - structural constituent of ribosome, putative [Ricinus communis]
15 Hb_048702_010 0.2113647102 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
16 Hb_000950_030 0.213977855 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
17 Hb_053709_040 0.2142393727 - - putative actin-97 protein [Linum usitatissimum]
18 Hb_001489_130 0.2169650738 - - Pectate lyase precursor, putative [Ricinus communis]
19 Hb_030992_010 0.2188035668 - - acetylornithine aminotransferase, putative [Ricinus communis]
20 Hb_034726_010 0.2194098276 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_050 Hb_004079_050 Hb_001247_030 Hb_001247_030 Hb_004079_050--Hb_001247_030 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_178968_040 Hb_178968_040 Hb_004079_050--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_004079_050--Hb_017002_010 Hb_122636_010 Hb_122636_010 Hb_004079_050--Hb_122636_010 Hb_188313_010 Hb_188313_010 Hb_004079_050--Hb_188313_010 Hb_001247_030--Hb_188313_010 Hb_004125_070 Hb_004125_070 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_001247_030--Hb_184541_010 Hb_006634_110--Hb_122636_010 Hb_048702_010 Hb_048702_010 Hb_006634_110--Hb_048702_010 Hb_100137_010 Hb_100137_010 Hb_006634_110--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130 Hb_014720_100 Hb_014720_100 Hb_178968_040--Hb_014720_100 Hb_178968_040--Hb_017002_010 Hb_002686_260 Hb_002686_260 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_178968_040--Hb_004125_070 Hb_017002_010--Hb_014720_100 Hb_008695_220 Hb_008695_220 Hb_017002_010--Hb_008695_220 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_122636_010--Hb_100137_010 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_188313_010--Hb_184541_010 Hb_188313_010--Hb_001217_010 Hb_188313_010--Hb_100137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.622856 0.336597 2.27282 23.4412 0 3.90973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37304 3.27409 1.36094 1.28229 3.63113

CAGE analysis