Hb_000345_080

Information

Type -
Description -
Location Contig345: 108145-108510
Sequence    

Annotation

kegg
ID rcu:RCOM_1433270
description RALFL33, putative
nr
ID XP_012089013.1
description PREDICTED: protein RALF-like 33 [Jatropha curcas]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID A0A067JU03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35979: 108159-108609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_080 0.0 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
2 Hb_000742_030 0.1532165126 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
3 Hb_020805_140 0.1548559488 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
4 Hb_001584_240 0.1662029079 - - ADP-ribosylation factor [Gossypium barbadense]
5 Hb_000175_260 0.1675421325 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
6 Hb_000294_050 0.1752410213 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
7 Hb_003304_110 0.1784928918 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001195_070 0.1795757307 - - PREDICTED: protein RER1B-like [Jatropha curcas]
9 Hb_008699_030 0.1813711273 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
10 Hb_003994_020 0.1819258975 - - -
11 Hb_000027_210 0.1915241533 - - Os01g0689300, partial [Oryza sativa Japonica Group]
12 Hb_178968_040 0.1918749877 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015675_030 0.1919920972 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
14 Hb_003103_010 0.1928099839 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008206_100 0.1935821123 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
16 Hb_002498_260 0.1952383765 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
17 Hb_007416_100 0.2014348847 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
18 Hb_025466_020 0.2020770168 - - tubulin beta-6 [Brassica oleracea var. italica]
19 Hb_008695_220 0.2056558033 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
20 Hb_000671_130 0.2085845842 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_080 Hb_000345_080 Hb_000742_030 Hb_000742_030 Hb_000345_080--Hb_000742_030 Hb_020805_140 Hb_020805_140 Hb_000345_080--Hb_020805_140 Hb_001584_240 Hb_001584_240 Hb_000345_080--Hb_001584_240 Hb_000175_260 Hb_000175_260 Hb_000345_080--Hb_000175_260 Hb_000294_050 Hb_000294_050 Hb_000345_080--Hb_000294_050 Hb_003304_110 Hb_003304_110 Hb_000345_080--Hb_003304_110 Hb_000742_030--Hb_000175_260 Hb_008695_220 Hb_008695_220 Hb_000742_030--Hb_008695_220 Hb_001195_070 Hb_001195_070 Hb_000742_030--Hb_001195_070 Hb_002205_170 Hb_002205_170 Hb_000742_030--Hb_002205_170 Hb_000742_030--Hb_000294_050 Hb_026527_010 Hb_026527_010 Hb_020805_140--Hb_026527_010 Hb_000107_350 Hb_000107_350 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001208_040 Hb_001208_040 Hb_001584_240--Hb_001208_040 Hb_000175_260--Hb_001195_070 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000254_140 Hb_000254_140 Hb_000175_260--Hb_000254_140 Hb_000175_260--Hb_000294_050 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_003103_010 Hb_003103_010 Hb_000294_050--Hb_003103_010 Hb_006153_030 Hb_006153_030 Hb_000294_050--Hb_006153_030 Hb_000192_020 Hb_000192_020 Hb_003304_110--Hb_000192_020 Hb_003304_110--Hb_020805_140 Hb_000094_200 Hb_000094_200 Hb_003304_110--Hb_000094_200 Hb_000438_120 Hb_000438_120 Hb_003304_110--Hb_000438_120 Hb_003304_110--Hb_000107_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03027 1.21249 8.90201 44.797 0.297202 3.66835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1749 13.0821 3.4828 5.15034 19.0723

CAGE analysis