Hb_025466_020

Information

Type -
Description -
Location Contig25466: 11049-11767
Sequence    

Annotation

kegg
ID zma:100272336
description magi9825, TIDP3158; LOC100272336
nr
ID AEG89523.1
description tubulin beta-6 [Brassica oleracea var. italica]
swissprot
ID P25862
description Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1
trembl
ID M1BNF0
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019131 PE=4 SV=1
Gene Ontology
ID GO:0005737
description beta- partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26586: 8603-12085 , PASA_asmbl_26587: 10420-12085
cDNA
(Sanger)
(ID:Location)		 002_P09.ab1: 8699-11040 , 004_E15.ab1: 8699-11041 , 004_H08.ab1: 8699-11070 , 011_A04.ab1: 8699-11052 , 037_L15.ab1: 8699-11059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025466_020 0.0 - - tubulin beta-6 [Brassica oleracea var. italica]
2 Hb_025466_010 0.088528257 - - unnamed protein product [Vitis vinifera]
3 Hb_006903_030 0.1183896866 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
4 Hb_048476_060 0.1340475893 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
5 Hb_021409_080 0.1351143379 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_001454_100 0.1405904674 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_111985_110 0.1433416914 - - thioredoxin H-type 3 [Hevea brasiliensis]
8 Hb_000260_280 0.1460578615 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_027073_010 0.1511202596 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
10 Hb_000210_100 0.1526417296 - - pepsin A, putative [Ricinus communis]
11 Hb_000310_100 0.1539241623 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020805_140 0.1546336738 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
13 Hb_012305_130 0.1598067521 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
14 Hb_000240_030 0.1605006805 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003207_020 0.1610474475 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
16 Hb_008699_030 0.1612451527 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
17 Hb_000671_130 0.1632845953 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
18 Hb_004007_110 0.1637122109 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
19 Hb_015675_030 0.1653434786 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
20 Hb_001153_120 0.1679312282 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]

Gene co-expression network

sample Hb_025466_020 Hb_025466_020 Hb_025466_010 Hb_025466_010 Hb_025466_020--Hb_025466_010 Hb_006903_030 Hb_006903_030 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_001454_100 Hb_001454_100 Hb_025466_020--Hb_001454_100 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_000310_100 Hb_000310_100 Hb_025466_010--Hb_000310_100 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_001153_120 Hb_001153_120 Hb_025466_010--Hb_001153_120 Hb_025466_010--Hb_006903_030 Hb_012244_010 Hb_012244_010 Hb_025466_010--Hb_012244_010 Hb_006903_030--Hb_048476_060 Hb_026889_040 Hb_026889_040 Hb_006903_030--Hb_026889_040 Hb_000110_050 Hb_000110_050 Hb_006903_030--Hb_000110_050 Hb_000244_170 Hb_000244_170 Hb_006903_030--Hb_000244_170 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_012305_130 Hb_012305_130 Hb_021409_080--Hb_012305_130 Hb_021409_080--Hb_111985_110 Hb_004627_030 Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_000210_100 Hb_000210_100 Hb_001454_100--Hb_000210_100 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_000260_280 Hb_000260_280 Hb_001454_100--Hb_000260_280 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_111985_110--Hb_004627_030 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1302 43.1877 153.822 537.485 27.3996 31.7851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
241.091 107.511 204.199 121.151 206.042

CAGE analysis