Hb_000310_100

Information

Type -
Description -
Location Contig310: 142478-143293
Sequence    

Annotation

kegg
ID rcu:RCOM_0251390
description hypothetical protein
nr
ID XP_002529792.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUW1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0251390 PE=4 SV=1
Gene Ontology
ID GO:0043565
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32821: 132837-141851 , PASA_asmbl_32825: 142420-142567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011861_100 0.1230231476 - - amino acid transporter, putative [Ricinus communis]
3 Hb_025466_010 0.124238719 - - unnamed protein product [Vitis vinifera]
4 Hb_001153_120 0.1398924558 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
5 Hb_012244_010 0.1413851566 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
6 Hb_106552_040 0.1439891234 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027073_010 0.1493377671 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
8 Hb_025466_020 0.1539241623 - - tubulin beta-6 [Brassica oleracea var. italica]
9 Hb_001124_100 0.1550829072 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
10 Hb_001454_100 0.1554272078 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
11 Hb_069696_010 0.1555657574 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
12 Hb_000946_110 0.1600687429 - - GTP cyclohydrolase I, putative [Ricinus communis]
13 Hb_026889_040 0.1643776318 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_001004_150 0.1674090274 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
15 Hb_003453_050 0.1698901235 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
16 Hb_006903_030 0.1701544494 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
17 Hb_015675_030 0.1717931674 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
18 Hb_011249_020 0.1745651955 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
19 Hb_008699_030 0.1775332834 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
20 Hb_000240_030 0.1797233267 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000310_100 Hb_000310_100 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_025466_010 Hb_025466_010 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_000252_100 Hb_000252_100 Hb_011861_100--Hb_000252_100 Hb_003305_040 Hb_003305_040 Hb_011861_100--Hb_003305_040 Hb_000215_280 Hb_000215_280 Hb_011861_100--Hb_000215_280 Hb_000505_150 Hb_000505_150 Hb_011861_100--Hb_000505_150 Hb_000454_090 Hb_000454_090 Hb_011861_100--Hb_000454_090 Hb_007386_040 Hb_007386_040 Hb_011861_100--Hb_007386_040 Hb_025466_020 Hb_025466_020 Hb_025466_010--Hb_025466_020 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_025466_010--Hb_001153_120 Hb_006903_030 Hb_006903_030 Hb_025466_010--Hb_006903_030 Hb_025466_010--Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_001153_120--Hb_011861_100 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_106552_040--Hb_006903_030 Hb_106552_040--Hb_025466_010 Hb_106552_040--Hb_012244_010 Hb_121881_010 Hb_121881_010 Hb_106552_040--Hb_121881_010 Hb_007441_080 Hb_007441_080 Hb_106552_040--Hb_007441_080 Hb_003207_020 Hb_003207_020 Hb_027073_010--Hb_003207_020 Hb_004007_110 Hb_004007_110 Hb_027073_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_027073_010--Hb_021409_080 Hb_004158_020 Hb_004158_020 Hb_027073_010--Hb_004158_020 Hb_003994_030 Hb_003994_030 Hb_027073_010--Hb_003994_030 Hb_028049_010 Hb_028049_010 Hb_027073_010--Hb_028049_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.788474 0.350526 1.00004 3.68537 0.0536229 0.469171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51206 0.930491 2.90397 1.31731 2.39134

CAGE analysis