Hb_006903_030

Information

Type -
Description -
Location Contig6903: 56999-60859
Sequence    

Annotation

kegg
ID rcu:RCOM_1709540
description hypothetical protein
nr
ID XP_012080432.1
description PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S276
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1709540 PE=4 SV=1
Gene Ontology
ID GO:0007126
description PREDICTED: uncharacterized protein LOC105640666

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54320: 58685-59163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006903_030 0.0 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
2 Hb_025466_020 0.1183896866 - - tubulin beta-6 [Brassica oleracea var. italica]
3 Hb_025466_010 0.1429182297 - - unnamed protein product [Vitis vinifera]
4 Hb_048476_060 0.1493339345 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
5 Hb_026889_040 0.1534051509 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_000110_050 0.1578432616 - - -
7 Hb_000244_170 0.1593723708 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
8 Hb_007894_010 0.1629725588 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
9 Hb_021409_080 0.1629745761 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
10 Hb_000260_280 0.1664364143 - - auxin:hydrogen symporter, putative [Ricinus communis]
11 Hb_028049_010 0.168072675 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000310_100 0.1701544494 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001454_100 0.1711897418 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
14 Hb_004007_110 0.1729918484 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
15 Hb_003244_020 0.1736034514 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
16 Hb_166574_010 0.1748382277 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
17 Hb_000136_100 0.1751166251 - - PREDICTED: syntaxin-61 [Jatropha curcas]
18 Hb_002110_100 0.1752744535 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_180343_010 0.1757972765 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
20 Hb_012305_130 0.17621968 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]

Gene co-expression network

sample Hb_006903_030 Hb_006903_030 Hb_025466_020 Hb_025466_020 Hb_006903_030--Hb_025466_020 Hb_025466_010 Hb_025466_010 Hb_006903_030--Hb_025466_010 Hb_048476_060 Hb_048476_060 Hb_006903_030--Hb_048476_060 Hb_026889_040 Hb_026889_040 Hb_006903_030--Hb_026889_040 Hb_000110_050 Hb_000110_050 Hb_006903_030--Hb_000110_050 Hb_000244_170 Hb_000244_170 Hb_006903_030--Hb_000244_170 Hb_025466_020--Hb_025466_010 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_001454_100 Hb_001454_100 Hb_025466_020--Hb_001454_100 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_000310_100 Hb_000310_100 Hb_025466_010--Hb_000310_100 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_001153_120 Hb_001153_120 Hb_025466_010--Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_025466_010--Hb_012244_010 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_091349_010 Hb_091349_010 Hb_026889_040--Hb_091349_010 Hb_000703_280 Hb_000703_280 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_002811_280 Hb_002811_280 Hb_000110_050--Hb_002811_280 Hb_000110_050--Hb_000402_130 Hb_012305_130 Hb_012305_130 Hb_000110_050--Hb_012305_130 Hb_001817_100 Hb_001817_100 Hb_000110_050--Hb_001817_100 Hb_002110_100 Hb_002110_100 Hb_000110_050--Hb_002110_100 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105277 0.0899592 0.901312 2.21839 0.0530454 0.36252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.860305 0.579379 0.992041 0.679203 0.730477

CAGE analysis