Hb_001817_100

Information

Type -
Description -
Location Contig1817: 82533-88803
Sequence    

Annotation

kegg
ID rcu:RCOM_0993240
description lyase, putative
nr
ID XP_012092078.1
description PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
swissprot
ID Q94JW0
description Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=1 SV=1
trembl
ID A0A067JBW9
description Deoxyhypusine hydroxylase OS=Jatropha curcas GN=JCGZ_21802 PE=3 SV=1
Gene Ontology
ID GO:0005829
description deoxyhypusine hydroxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17663: 88424-88661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_100 0.0 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
2 Hb_007590_090 0.0604516224 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
3 Hb_002217_100 0.0873966543 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
4 Hb_002615_030 0.0979104804 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
5 Hb_000023_310 0.1064512622 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
6 Hb_002007_320 0.1076649522 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
7 Hb_001998_200 0.1078326051 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
8 Hb_002534_130 0.1132189829 - - membrane associated ring finger 1,8, putative [Ricinus communis]
9 Hb_001975_030 0.1152361465 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
10 Hb_000110_050 0.1166837 - - -
11 Hb_003371_070 0.1179283926 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
12 Hb_000110_060 0.120015228 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
13 Hb_000012_110 0.1222274272 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
14 Hb_004007_110 0.1223332297 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
15 Hb_002486_080 0.129319466 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
16 Hb_003602_060 0.1294065262 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
17 Hb_177215_030 0.1314930212 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
18 Hb_005686_130 0.1323879378 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
19 Hb_000648_050 0.1346475584 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
20 Hb_001510_020 0.1379659179 - - Diaminopimelate epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001817_100 Hb_001817_100 Hb_007590_090 Hb_007590_090 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_002615_030 Hb_002615_030 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200 Hb_007590_090--Hb_002615_030 Hb_004007_110 Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_007590_090--Hb_002217_100 Hb_002217_100--Hb_002615_030 Hb_001016_100 Hb_001016_100 Hb_002217_100--Hb_001016_100 Hb_002045_060 Hb_002045_060 Hb_002217_100--Hb_002045_060 Hb_000964_030 Hb_000964_030 Hb_002217_100--Hb_000964_030 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_000023_310--Hb_002007_320 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_000023_310--Hb_007590_090 Hb_003371_070 Hb_003371_070 Hb_000023_310--Hb_003371_070 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_001998_200--Hb_000012_110 Hb_001998_200--Hb_004007_110 Hb_001998_200--Hb_002615_030 Hb_003602_060 Hb_003602_060 Hb_001998_200--Hb_003602_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292181 1.33579 3.13214 4.03648 0.167884 0.269319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31581 1.99268 1.98994 2.67714 2.37756

CAGE analysis