Hb_001998_200

Information

Type -
Description -
Location Contig1998: 225945-231348
Sequence    

Annotation

kegg
ID rcu:RCOM_0771330
description UDP-glucose 4-epimerase, putative (EC:5.1.3.5)
nr
ID XP_002529901.1
description UDP-glucose 4-epimerase, putative [Ricinus communis]
swissprot
ID Q9SA77
description UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1
trembl
ID B9SV82
description UDP-glucose 4-epimerase, putative OS=Ricinus communis GN=RCOM_0771330 PE=3 SV=1
Gene Ontology
ID GO:0003978
description udp-arabinose 4-epimerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20004: 226307-231254 , PASA_asmbl_20005: 226068-231254 , PASA_asmbl_20007: 229565-229779 , PASA_asmbl_20009: 227099-229071 , PASA_asmbl_20010: 226307-227420 , PASA_asmbl_20011: 226236-226626
cDNA
(Sanger)
(ID:Location)		 007_A03.ab1: 227099-229071 , 022_G15.ab1: 227145-227452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_200 0.0 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
2 Hb_000012_110 0.086182866 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
3 Hb_007590_090 0.0925914687 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
4 Hb_001817_100 0.1078326051 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
5 Hb_004007_110 0.115135037 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
6 Hb_002615_030 0.1164281269 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
7 Hb_003602_060 0.1193352348 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
8 Hb_007441_080 0.1291204676 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
9 Hb_003371_070 0.1293953369 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
10 Hb_001975_030 0.1319334385 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
11 Hb_000110_060 0.132617734 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
12 Hb_002007_320 0.1337066849 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
13 Hb_000007_200 0.1344346092 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
14 Hb_000648_050 0.1384619337 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
15 Hb_000017_260 0.1394872123 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
16 Hb_002486_080 0.1399732728 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
17 Hb_012807_130 0.1405469985 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
18 Hb_015057_020 0.140701509 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
19 Hb_002217_100 0.1425523604 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
20 Hb_065525_120 0.1429526064 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001998_200 Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_001998_200--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_001998_200--Hb_007590_090 Hb_001817_100 Hb_001817_100 Hb_001998_200--Hb_001817_100 Hb_004007_110 Hb_004007_110 Hb_001998_200--Hb_004007_110 Hb_002615_030 Hb_002615_030 Hb_001998_200--Hb_002615_030 Hb_003602_060 Hb_003602_060 Hb_001998_200--Hb_003602_060 Hb_000012_110--Hb_004007_110 Hb_000012_110--Hb_002615_030 Hb_000012_110--Hb_007590_090 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_007590_090--Hb_001817_100 Hb_007590_090--Hb_002615_030 Hb_007590_090--Hb_004007_110 Hb_002217_100 Hb_002217_100 Hb_007590_090--Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_003602_060--Hb_002007_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54892 8.40376 16.1523 21.8682 1.0705 1.20319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7886 11.5218 8.13745 10.2137 17.2722

CAGE analysis