Hb_093458_010

Information

Type -
Description -
Location Contig93458: 9796-13830
Sequence    

Annotation

kegg
ID tcc:TCM_020369
description Vesicle-associated membrane protein 726 isoform 1
nr
ID KDO49381.1
description hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
swissprot
ID P47192
description Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2
trembl
ID A0A067EEN5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0277592mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 726

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62956: 10016-13820
cDNA
(Sanger)
(ID:Location)		 001_G07.ab1: 10483-13820 , 048_D04.ab1: 10490-13820 , 053_K08.ab1: 10823-13820

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093458_010 0.0 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
2 Hb_003602_060 0.0977527334 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
3 Hb_001767_060 0.1136320791 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_015807_160 0.1139088645 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
5 Hb_040819_010 0.118070661 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_001863_070 0.1275614508 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
7 Hb_000645_200 0.128339669 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
8 Hb_154038_020 0.13052161 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
9 Hb_000529_280 0.1318135677 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
10 Hb_000926_200 0.1323822112 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
11 Hb_004984_030 0.1356046105 - - protein with unknown function [Ricinus communis]
12 Hb_004931_110 0.1380801674 - - inorganic phosphate transporter, putative [Ricinus communis]
13 Hb_005914_110 0.139290181 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
14 Hb_002217_100 0.1421039067 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
15 Hb_002693_030 0.1421504137 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
16 Hb_002028_090 0.1422036357 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
17 Hb_000023_310 0.14306739 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
18 Hb_001147_050 0.1450830662 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
19 Hb_027506_040 0.145569665 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_000189_570 0.1458757588 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]

Gene co-expression network

sample Hb_093458_010 Hb_093458_010 Hb_003602_060 Hb_003602_060 Hb_093458_010--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_093458_010--Hb_001767_060 Hb_015807_160 Hb_015807_160 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_001863_070 Hb_001863_070 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_001767_060--Hb_154038_020 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_015807_160--Hb_001863_070 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_000926_200 Hb_000926_200 Hb_040819_010--Hb_000926_200 Hb_004984_030 Hb_004984_030 Hb_040819_010--Hb_004984_030 Hb_040819_010--Hb_002028_090 Hb_000035_160 Hb_000035_160 Hb_040819_010--Hb_000035_160 Hb_032202_100 Hb_032202_100 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85529 14.1996 28.0758 29.5047 1.90141 3.43937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.1981 25.9875 11.4705 8.63999 16.7691

CAGE analysis