Hb_001114_170

Information

Type -
Description -
Location Contig1114: 181779-182105
Sequence    

Annotation

kegg
ID rcu:RCOM_0885390
description hypothetical protein
nr
ID XP_002522650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9I1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03499: 181907-182305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_089140_090 0.1198407624 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
3 Hb_000757_130 0.1398092952 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015807_160 0.1398987523 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
5 Hb_002027_440 0.1426411521 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001863_070 0.1435354528 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
7 Hb_101146_010 0.1466455332 - - PREDICTED: peregrin-like [Jatropha curcas]
8 Hb_000800_020 0.148574693 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
9 Hb_001155_050 0.1506147124 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
10 Hb_000563_440 0.1513238545 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
11 Hb_011242_050 0.1571442036 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
12 Hb_006588_190 0.1620206758 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
13 Hb_007113_080 0.1622320138 - - PREDICTED: uncharacterized protein LOC105639553 isoform X1 [Jatropha curcas]
14 Hb_013405_070 0.1629692981 - - ferric-chelate reductase, putative [Ricinus communis]
15 Hb_011671_340 0.1630073777 - - small GTPase [Hevea brasiliensis]
16 Hb_029253_010 0.165747855 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
17 Hb_002960_090 0.1671912774 - - protein with unknown function [Ricinus communis]
18 Hb_000589_170 0.1689379903 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_015778_040 0.1703390406 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
20 Hb_004449_040 0.1706983711 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]

Gene co-expression network

sample Hb_001114_170 Hb_001114_170 Hb_089140_090 Hb_089140_090 Hb_001114_170--Hb_089140_090 Hb_000757_130 Hb_000757_130 Hb_001114_170--Hb_000757_130 Hb_015807_160 Hb_015807_160 Hb_001114_170--Hb_015807_160 Hb_002027_440 Hb_002027_440 Hb_001114_170--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_001114_170--Hb_001863_070 Hb_101146_010 Hb_101146_010 Hb_001114_170--Hb_101146_010 Hb_033594_040 Hb_033594_040 Hb_089140_090--Hb_033594_040 Hb_089140_090--Hb_002027_440 Hb_000563_440 Hb_000563_440 Hb_089140_090--Hb_000563_440 Hb_089140_090--Hb_015807_160 Hb_002045_190 Hb_002045_190 Hb_089140_090--Hb_002045_190 Hb_029253_010 Hb_029253_010 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_015807_160--Hb_001863_070 Hb_001767_060 Hb_001767_060 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_011242_050 Hb_011242_050 Hb_002027_440--Hb_011242_050 Hb_002027_440--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_002027_440--Hb_001329_070 Hb_000345_460 Hb_000345_460 Hb_002027_440--Hb_000345_460 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_188281_030 Hb_188281_030 Hb_002027_440--Hb_188281_030 Hb_001863_070--Hb_011242_050 Hb_003602_060 Hb_003602_060 Hb_001863_070--Hb_003602_060 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19129 2.73308 8.90069 5.06247 0.241528 0.765167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.912403 3.82705 0.354743 1.63023 2.70792

CAGE analysis