Hb_033594_040

Information

Type -
Description -
Location Contig33594: 14688-22572
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00900g
description POPTRDRAFT_571983; hypothetical protein
nr
ID XP_012079429.1
description PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SZG0
description Heptahelical transmembrane protein 4 OS=Arabidopsis thaliana GN=HHP4 PE=2 SV=1
trembl
ID A0A067KIJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12551 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heptahelical transmembrane protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35129: 15481-20307 , PASA_asmbl_35130: 22090-22464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_040 0.0 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
2 Hb_004046_060 0.1390459199 - - PREDICTED: protein CDI [Jatropha curcas]
3 Hb_004116_120 0.142293471 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
4 Hb_089140_090 0.1424182051 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
5 Hb_002045_190 0.1544466337 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
6 Hb_000563_440 0.1554749702 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
7 Hb_000139_280 0.1622511378 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
8 Hb_001975_130 0.1701865381 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
9 Hb_003399_100 0.170634929 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
10 Hb_006275_060 0.1741745981 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_001478_020 0.1742745238 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
12 Hb_005725_150 0.178982734 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
13 Hb_003784_040 0.1812131765 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
14 Hb_002007_040 0.1840746342 - - unnamed protein product [Coffea canephora]
15 Hb_003938_170 0.1858923925 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
16 Hb_001198_080 0.1901189852 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
17 Hb_000051_080 0.1919695157 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
18 Hb_002218_100 0.1951097024 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
19 Hb_002078_120 0.1954752145 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
20 Hb_005946_020 0.1959241718 - - Pleiotropic drug resistance protein 4 [Triticum urartu]

Gene co-expression network

sample Hb_033594_040 Hb_033594_040 Hb_004046_060 Hb_004046_060 Hb_033594_040--Hb_004046_060 Hb_004116_120 Hb_004116_120 Hb_033594_040--Hb_004116_120 Hb_089140_090 Hb_089140_090 Hb_033594_040--Hb_089140_090 Hb_002045_190 Hb_002045_190 Hb_033594_040--Hb_002045_190 Hb_000563_440 Hb_000563_440 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280 Hb_001541_190 Hb_001541_190 Hb_004046_060--Hb_001541_190 Hb_002217_190 Hb_002217_190 Hb_004046_060--Hb_002217_190 Hb_000175_300 Hb_000175_300 Hb_004046_060--Hb_000175_300 Hb_004679_040 Hb_004679_040 Hb_004046_060--Hb_004679_040 Hb_006289_020 Hb_006289_020 Hb_004046_060--Hb_006289_020 Hb_004116_120--Hb_002045_190 Hb_004116_120--Hb_000563_440 Hb_002307_020 Hb_002307_020 Hb_004116_120--Hb_002307_020 Hb_006275_060 Hb_006275_060 Hb_004116_120--Hb_006275_060 Hb_003399_100 Hb_003399_100 Hb_004116_120--Hb_003399_100 Hb_001114_170 Hb_001114_170 Hb_089140_090--Hb_001114_170 Hb_002027_440 Hb_002027_440 Hb_089140_090--Hb_002027_440 Hb_089140_090--Hb_000563_440 Hb_015807_160 Hb_015807_160 Hb_089140_090--Hb_015807_160 Hb_089140_090--Hb_002045_190 Hb_002045_190--Hb_003399_100 Hb_002045_190--Hb_006275_060 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_003784_040 Hb_003784_040 Hb_000139_280--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_000139_280--Hb_005504_040 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_000139_280--Hb_006275_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.215527 0.532402 4.04907 1.5266 0.0155515 0.0343664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.41677 0.804726 0.444817 0.178908 0.433114

CAGE analysis