Hb_000175_300

Information

Type -
Description -
Location Contig175: 185865-187112
Sequence    

Annotation

kegg
ID rcu:RCOM_0899880
description hypothetical protein
nr
ID XP_012073181.1
description PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06142 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16697: 185700-187244
cDNA
(Sanger)
(ID:Location)		 011_F16.ab1: 186189-187144 , 025_F16.ab1: 186252-187244 , 027_F03.ab1: 186201-187118 , 033_L19.ab1: 186317-187118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_300 0.0 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
2 Hb_001541_190 0.1267595565 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
3 Hb_000069_300 0.1404143748 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000190_220 0.1426066325 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
5 Hb_001307_020 0.1443194434 - - electron carrier, putative [Ricinus communis]
6 Hb_001633_160 0.1477250639 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
7 Hb_004679_040 0.1492227183 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
8 Hb_000956_050 0.1505724116 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
9 Hb_001862_050 0.1560698913 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
10 Hb_009339_040 0.1590094504 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000907_140 0.1599182795 - - PREDICTED: annexin D5-like [Jatropha curcas]
12 Hb_151103_010 0.1606668797 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006060_010 0.1607715995 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
14 Hb_003667_020 0.160791727 - - conserved hypothetical protein 16 [Hevea brasiliensis]
15 Hb_007076_010 0.1618988801 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_010436_080 0.162562825 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
17 Hb_024714_090 0.1638313582 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
18 Hb_004046_060 0.1674452328 - - PREDICTED: protein CDI [Jatropha curcas]
19 Hb_000165_090 0.1688316499 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
20 Hb_000027_160 0.1703570429 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_300 Hb_000175_300 Hb_001541_190 Hb_001541_190 Hb_000175_300--Hb_001541_190 Hb_000069_300 Hb_000069_300 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_001307_020 Hb_001307_020 Hb_000175_300--Hb_001307_020 Hb_001633_160 Hb_001633_160 Hb_000175_300--Hb_001633_160 Hb_004679_040 Hb_004679_040 Hb_000175_300--Hb_004679_040 Hb_001541_190--Hb_000069_300 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_008511_040 Hb_008511_040 Hb_000069_300--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_000069_300--Hb_001862_050 Hb_006133_020 Hb_006133_020 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_000027_160 Hb_000027_160 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_000905_100 Hb_000905_100 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_024714_090 Hb_024714_090 Hb_001633_160--Hb_024714_090 Hb_001633_160--Hb_001307_020 Hb_001085_160 Hb_001085_160 Hb_001633_160--Hb_001085_160 Hb_001633_160--Hb_000027_160 Hb_000256_030 Hb_000256_030 Hb_001633_160--Hb_000256_030 Hb_091318_010 Hb_091318_010 Hb_004679_040--Hb_091318_010 Hb_001155_050 Hb_001155_050 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0820542 3.43739 12.5279 7.10273 0.145233 0.311878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04194 0.455218 0.166326 1.26665 1.75501

CAGE analysis