Hb_004970_070

Information

Type -
Description -
Location Contig4970: 56327-57939
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12620g
description POPTRDRAFT_644105; hypothetical protein
nr
ID XP_002301174.1
description hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GNU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45547: 56343-57970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_070 0.0 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
2 Hb_007904_290 0.1267490689 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
3 Hb_002048_100 0.1268635462 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
4 Hb_004712_090 0.1319953176 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
5 Hb_001040_060 0.135390809 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
6 Hb_001541_190 0.1393988102 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
7 Hb_000134_260 0.1394285409 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_000454_080 0.1420310506 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
9 Hb_155946_030 0.1462403545 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
10 Hb_000071_090 0.1470389742 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
11 Hb_001430_010 0.1476445046 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
12 Hb_031266_020 0.1499965493 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
13 Hb_001627_010 0.1501858825 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_002374_200 0.1560868715 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
15 Hb_002014_050 0.158486315 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
16 Hb_008406_070 0.1596503132 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
17 Hb_001769_120 0.1632833436 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
18 Hb_002217_190 0.1655697112 - - invertase [Hevea brasiliensis]
19 Hb_000162_130 0.1656553992 - - conserved hypothetical protein [Ricinus communis]
20 Hb_160653_010 0.1674505042 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_004970_070 Hb_004970_070 Hb_007904_290 Hb_007904_290 Hb_004970_070--Hb_007904_290 Hb_002048_100 Hb_002048_100 Hb_004970_070--Hb_002048_100 Hb_004712_090 Hb_004712_090 Hb_004970_070--Hb_004712_090 Hb_001040_060 Hb_001040_060 Hb_004970_070--Hb_001040_060 Hb_001541_190 Hb_001541_190 Hb_004970_070--Hb_001541_190 Hb_000134_260 Hb_000134_260 Hb_004970_070--Hb_000134_260 Hb_002014_050 Hb_002014_050 Hb_007904_290--Hb_002014_050 Hb_001430_010 Hb_001430_010 Hb_007904_290--Hb_001430_010 Hb_012272_010 Hb_012272_010 Hb_007904_290--Hb_012272_010 Hb_000071_090 Hb_000071_090 Hb_007904_290--Hb_000071_090 Hb_001627_010 Hb_001627_010 Hb_007904_290--Hb_001627_010 Hb_002048_100--Hb_001430_010 Hb_002133_010 Hb_002133_010 Hb_002048_100--Hb_002133_010 Hb_031266_020 Hb_031266_020 Hb_002048_100--Hb_031266_020 Hb_003119_040 Hb_003119_040 Hb_002048_100--Hb_003119_040 Hb_015037_010 Hb_015037_010 Hb_002048_100--Hb_015037_010 Hb_004712_090--Hb_000134_260 Hb_000392_170 Hb_000392_170 Hb_004712_090--Hb_000392_170 Hb_000059_030 Hb_000059_030 Hb_004712_090--Hb_000059_030 Hb_000856_230 Hb_000856_230 Hb_004712_090--Hb_000856_230 Hb_000308_010 Hb_000308_010 Hb_004712_090--Hb_000308_010 Hb_014361_170 Hb_014361_170 Hb_001040_060--Hb_014361_170 Hb_001040_060--Hb_001627_010 Hb_004679_040 Hb_004679_040 Hb_001040_060--Hb_004679_040 Hb_002217_190 Hb_002217_190 Hb_001040_060--Hb_002217_190 Hb_000567_330 Hb_000567_330 Hb_001040_060--Hb_000567_330 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86949 68.2452 131.263 60.403 0.84104 0.2782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71498 6.4337 2.83271 14.3271 10.9291

CAGE analysis