Hb_001040_060

Information

Type -
Description -
Location Contig1040: 138742-141194
Sequence    

Annotation

kegg
ID rcu:RCOM_0935950
description hypothetical protein
nr
ID XP_012091577.1
description PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
swissprot
ID Q84WQ5
description CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2
trembl
ID A0A067JB04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21418 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01460: 138736-141398
cDNA
(Sanger)
(ID:Location)		 025_E20.ab1: 138736-140374

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_060 0.0 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
2 Hb_014361_170 0.1014362583 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
3 Hb_001627_010 0.1324469899 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_004970_070 0.135390809 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
5 Hb_004679_040 0.1416664674 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
6 Hb_002217_190 0.144087287 - - invertase [Hevea brasiliensis]
7 Hb_000567_330 0.1467819631 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
8 Hb_003688_220 0.1479041723 - - unknown [Populus trichocarpa]
9 Hb_000454_080 0.1508454204 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
10 Hb_000009_420 0.155573283 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
11 Hb_001776_130 0.1561513228 - - metallothionein [Hevea brasiliensis]
12 Hb_028487_040 0.1565913775 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
13 Hb_086639_050 0.1606585449 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_001318_150 0.1621894269 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
15 Hb_000495_050 0.1631962807 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
16 Hb_000529_040 0.164200042 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
17 Hb_003759_040 0.1642882912 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
18 Hb_002095_050 0.1652101865 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
19 Hb_007894_180 0.1669767454 - - PREDICTED: cytochrome P450 716B1-like [Jatropha curcas]
20 Hb_054865_050 0.1673959527 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001040_060 Hb_001040_060 Hb_014361_170 Hb_014361_170 Hb_001040_060--Hb_014361_170 Hb_001627_010 Hb_001627_010 Hb_001040_060--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_001040_060--Hb_004970_070 Hb_004679_040 Hb_004679_040 Hb_001040_060--Hb_004679_040 Hb_002217_190 Hb_002217_190 Hb_001040_060--Hb_002217_190 Hb_000567_330 Hb_000567_330 Hb_001040_060--Hb_000567_330 Hb_001294_040 Hb_001294_040 Hb_014361_170--Hb_001294_040 Hb_014361_170--Hb_001627_010 Hb_011381_070 Hb_011381_070 Hb_014361_170--Hb_011381_070 Hb_132840_020 Hb_132840_020 Hb_014361_170--Hb_132840_020 Hb_000111_390 Hb_000111_390 Hb_014361_170--Hb_000111_390 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_001627_010--Hb_000111_390 Hb_007904_290 Hb_007904_290 Hb_004970_070--Hb_007904_290 Hb_002048_100 Hb_002048_100 Hb_004970_070--Hb_002048_100 Hb_004712_090 Hb_004712_090 Hb_004970_070--Hb_004712_090 Hb_001541_190 Hb_001541_190 Hb_004970_070--Hb_001541_190 Hb_000134_260 Hb_000134_260 Hb_004970_070--Hb_000134_260 Hb_091318_010 Hb_091318_010 Hb_004679_040--Hb_091318_010 Hb_001155_050 Hb_001155_050 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170 Hb_002217_190--Hb_001519_060 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_089305_010 Hb_089305_010 Hb_000567_330--Hb_089305_010 Hb_007130_020 Hb_007130_020 Hb_000567_330--Hb_007130_020 Hb_033006_020 Hb_033006_020 Hb_000567_330--Hb_033006_020 Hb_004899_110 Hb_004899_110 Hb_000567_330--Hb_004899_110 Hb_000836_090 Hb_000836_090 Hb_000567_330--Hb_000836_090 Hb_010812_060 Hb_010812_060 Hb_000567_330--Hb_010812_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50601 166.158 360.704 131.108 2.74047 2.68492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9089 27.709 13.2359 78.0681 73.2968

CAGE analysis