Hb_002217_190

Information

Type -
Description -
Location Contig2217: 218670-222604
Sequence    

Annotation

kegg
ID rcu:RCOM_1002060
description beta-fructofuranosidase, putative
nr
ID AHF27220.1
description invertase [Hevea brasiliensis]
swissprot
ID B9DFA8
description Alkaline/neutral invertase C, mitochondrial OS=Arabidopsis thaliana GN=INVC PE=1 SV=1
trembl
ID W0FQR0
description Invertase OS=Hevea brasiliensis GN=IN2 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22912: 218400-222644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_190 0.0 - - invertase [Hevea brasiliensis]
2 Hb_001519_060 0.1158708327 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
3 Hb_008173_060 0.1239786554 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
4 Hb_000818_120 0.1363388912 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001627_010 0.1364278586 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
6 Hb_176472_020 0.1378112179 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001198_080 0.1385673534 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_004679_040 0.1396207049 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
9 Hb_002249_170 0.1404481159 - - copine, putative [Ricinus communis]
10 Hb_001040_060 0.144087287 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
11 Hb_001318_150 0.1495227944 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
12 Hb_007224_010 0.1500008043 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_001155_050 0.1503863423 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
14 Hb_161901_020 0.1505738863 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
15 Hb_001579_070 0.153358358 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
16 Hb_000003_240 0.1537605512 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001242_180 0.1546567828 - - choline/ethanolamine kinase, putative [Ricinus communis]
18 Hb_003106_200 0.1553351076 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
19 Hb_012545_030 0.1566923578 - - Polyadenylate-binding protein RBP47C [Glycine soja]
20 Hb_005701_110 0.1567466289 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_002217_190 Hb_002217_190 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001519_060--Hb_001627_010 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_001579_070 Hb_001579_070 Hb_001519_060--Hb_001579_070 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_000818_120--Hb_001198_080 Hb_003106_200 Hb_003106_200 Hb_000818_120--Hb_003106_200 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_001155_050 Hb_001155_050 Hb_000818_120--Hb_001155_050 Hb_002249_170 Hb_002249_170 Hb_000818_120--Hb_002249_170 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_001627_010--Hb_007224_010 Hb_132840_020 Hb_132840_020 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_001198_080--Hb_003106_200 Hb_001198_080--Hb_001155_050 Hb_003549_130 Hb_003549_130 Hb_001198_080--Hb_003549_130 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79924 27.1482 55.4606 20.8168 1.427 1.76483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28322 7.68031 4.12611 5.01792 8.71804

CAGE analysis