Hb_006775_070

Information

Type -
Description -
Location Contig6775: 45201-53128
Sequence    

Annotation

kegg
ID rcu:RCOM_1252950
description zinc finger protein, putative
nr
ID XP_002522291.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FK75
description GDSL esterase/lipase At5g45670 OS=Arabidopsis thaliana GN=At5g45670 PE=2 SV=1
trembl
ID B9S8H2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1252950 PE=4 SV=1
Gene Ontology
ID GO:0016635
description gdsl esterase lipase at1g29670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53610: 48625-50322 , PASA_asmbl_53611: 51257-53205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_070 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_176472_020 0.1500461783 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000959_190 0.1535290967 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
4 Hb_000260_610 0.1541320898 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
5 Hb_012787_030 0.1641033529 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
6 Hb_000732_030 0.1668567931 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002518_200 0.1707821024 - - Proliferating cell nuclear antigen [Theobroma cacao]
8 Hb_000008_390 0.1716483714 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
9 Hb_000134_030 0.1743776521 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
10 Hb_005276_030 0.1744910177 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
11 Hb_007545_110 0.1745992713 - - catalytic, putative [Ricinus communis]
12 Hb_032202_130 0.1772485473 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
13 Hb_008173_060 0.1788952853 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
14 Hb_001123_110 0.1799423139 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004631_200 0.1819739997 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003529_180 0.1824903296 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
17 Hb_000185_230 0.1827651984 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000032_200 0.1833392345 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
19 Hb_003747_050 0.1835334763 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
20 Hb_001214_190 0.1844516553 - - hypothetical protein JCGZ_25001 [Jatropha curcas]

Gene co-expression network

sample Hb_006775_070 Hb_006775_070 Hb_176472_020 Hb_176472_020 Hb_006775_070--Hb_176472_020 Hb_000959_190 Hb_000959_190 Hb_006775_070--Hb_000959_190 Hb_000260_610 Hb_000260_610 Hb_006775_070--Hb_000260_610 Hb_012787_030 Hb_012787_030 Hb_006775_070--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_006775_070--Hb_000732_030 Hb_002518_200 Hb_002518_200 Hb_006775_070--Hb_002518_200 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_000959_190--Hb_000732_030 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_015026_020 Hb_015026_020 Hb_012787_030--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_012787_030--Hb_001894_160 Hb_000928_250 Hb_000928_250 Hb_012787_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_012787_030--Hb_003106_200 Hb_003747_050 Hb_003747_050 Hb_012787_030--Hb_003747_050 Hb_011671_110 Hb_011671_110 Hb_012787_030--Hb_011671_110 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_000181_270 Hb_000181_270 Hb_002518_200--Hb_000181_270 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4779 6.05533 18.8657 7.89161 1.80706 0.342731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.888658 1.25064 0.949139 1.35075 1.14417

CAGE analysis