Hb_001894_160

Information

Type -
Description -
Location Contig1894: 142493-146167
Sequence    

Annotation

kegg
ID rcu:RCOM_0528040
description hypothetical protein
nr
ID XP_002525367.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528040 PE=4 SV=1
Gene Ontology
ID GO:0009694
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18816: 142540-146191 , PASA_asmbl_18817: 143871-144102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011671_110 0.0638661315 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
3 Hb_005941_020 0.069322137 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
4 Hb_033930_010 0.0748741022 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
5 Hb_000928_250 0.0805019655 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_015026_020 0.0837881559 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
7 Hb_000622_210 0.0860360276 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
8 Hb_161901_020 0.1089527433 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
9 Hb_000086_640 0.1097650532 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_012787_030 0.1150410974 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
11 Hb_000317_190 0.1151529968 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
12 Hb_047442_010 0.1168267584 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
13 Hb_006935_040 0.1169438918 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_000212_300 0.1211053911 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_003106_200 0.1240189515 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
16 Hb_003090_150 0.1278676933 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
17 Hb_001776_200 0.1278779469 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
18 Hb_007224_010 0.1281210669 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
19 Hb_000035_490 0.1284075994 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
20 Hb_001021_100 0.1284963851 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_001894_160 Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_001894_160--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_001894_160--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_005941_020--Hb_033930_010 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000086_640 Hb_000086_640 Hb_005941_020--Hb_000086_640 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_033930_010--Hb_000622_210 Hb_033930_010--Hb_000086_640 Hb_003106_200 Hb_003106_200 Hb_000928_250--Hb_003106_200 Hb_000928_250--Hb_015026_020 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_000928_250--Hb_011671_110 Hb_000928_250--Hb_000622_210 Hb_015026_020--Hb_003106_200 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000622_210--Hb_000318_410 Hb_000622_210--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2649 70.1916 102.472 29.5271 11.5561 10.0598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73304 5.56768 5.75296 10.0263 34.2526

CAGE analysis