Hb_033930_010

Information

Type -
Description -
Location Contig33930: 14020-20562
Sequence    

Annotation

kegg
ID rcu:RCOM_0810140
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID XP_012073976.1
description PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067KND9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08870 PE=4 SV=1
Gene Ontology
ID GO:0016746
description bromodomain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35440: 13934-15999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033930_010 0.0 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
2 Hb_005941_020 0.0727475297 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
3 Hb_001894_160 0.0748741022 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011671_110 0.0853342528 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_000318_410 0.0947957082 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
6 Hb_000622_210 0.0980977497 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
7 Hb_000086_640 0.1024243373 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_161901_020 0.1069361575 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
9 Hb_015026_020 0.1205462082 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
10 Hb_047442_010 0.121386815 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_000035_490 0.1214623375 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
12 Hb_000753_140 0.1261729149 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
13 Hb_000317_190 0.1280114045 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
14 Hb_032202_050 0.1286726553 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
15 Hb_005694_130 0.1317613292 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
16 Hb_015807_080 0.1330332077 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
17 Hb_003090_150 0.1338601603 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
18 Hb_000928_250 0.1348995997 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_002030_110 0.1351845549 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
20 Hb_002639_130 0.1366663392 - - hypothetical protein JCGZ_08129 [Jatropha curcas]

Gene co-expression network

sample Hb_033930_010 Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_033930_010--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_033930_010--Hb_011671_110 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_000622_210 Hb_000622_210 Hb_033930_010--Hb_000622_210 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640 Hb_005941_020--Hb_001894_160 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_005941_020--Hb_000086_640 Hb_001894_160--Hb_011671_110 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_001894_160--Hb_000622_210 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_000753_140 Hb_000753_140 Hb_000318_410--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_000318_410--Hb_132840_020 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000622_210--Hb_000928_250 Hb_000622_210--Hb_005941_020 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_000086_640--Hb_000753_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66026 24.7149 26.1464 6.40194 3.35928 2.63657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51641 1.89595 1.51788 3.90538 9.47844

CAGE analysis