Hb_011671_110

Information

Type -
Description -
Location Contig11671: 107217-111063
Sequence    

Annotation

kegg
ID rcu:RCOM_1500870
description hypothetical protein
nr
ID XP_012090465.1
description PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05138: 109797-110201 , PASA_asmbl_05139: 107249-111121 , PASA_asmbl_05141: 107265-107758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_110 0.0 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
2 Hb_001894_160 0.0638661315 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005941_020 0.0750087731 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
4 Hb_033930_010 0.0853342528 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
5 Hb_015026_020 0.0887350527 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_001776_200 0.0924714748 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
7 Hb_005394_010 0.0951747497 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
8 Hb_047442_010 0.0961559681 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
9 Hb_002249_170 0.1035033315 - - copine, putative [Ricinus communis]
10 Hb_000111_390 0.1071926528 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
11 Hb_000212_300 0.1075399255 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
12 Hb_000086_640 0.109059241 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_000928_250 0.1099422785 - - calcium ion binding protein, putative [Ricinus communis]
14 Hb_000035_490 0.1142797406 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
15 Hb_003747_050 0.1144458288 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
16 Hb_000317_190 0.1168586522 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_000622_210 0.1177504473 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
18 Hb_001102_090 0.1196945643 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_002965_080 0.120405499 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
20 Hb_161901_020 0.1204120103 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_011671_110 Hb_011671_110 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210 Hb_005941_020--Hb_033930_010 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000086_640 Hb_000086_640 Hb_005941_020--Hb_000086_640 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_033930_010--Hb_000622_210 Hb_033930_010--Hb_000086_640 Hb_015026_020--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_015026_020--Hb_003106_200 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_001414_050 Hb_001414_050 Hb_001776_200--Hb_001414_050 Hb_047442_010 Hb_047442_010 Hb_001776_200--Hb_047442_010 Hb_001776_200--Hb_005394_010 Hb_002609_190 Hb_002609_190 Hb_001776_200--Hb_002609_190 Hb_001776_200--Hb_001894_160 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_005394_010--Hb_047442_010 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.6117 43.491 61.4205 21.6883 7.97261 7.06598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.6586 4.38805 2.80916 10.8395 18.1417

CAGE analysis