Hb_015026_040

Information

Type -
Description -
Location Contig15026: 19937-20566
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03550g
description POPTRDRAFT_555508; VPS28 protein 2
nr
ID XP_012091511.1
description PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
swissprot
ID Q9S9T7
description Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2
trembl
ID A0A067JLK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21366 PE=4 SV=1
Gene Ontology
ID GO:0000813
description vacuolar protein sorting-associated protein 28 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12592: 19703-21292
cDNA
(Sanger)
(ID:Location)		 027_K19.ab1: 20234-21292

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_040 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
2 Hb_000221_230 0.0731868298 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
3 Hb_041895_040 0.101333454 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005394_010 0.1067029539 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
5 Hb_000445_100 0.1144133971 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
6 Hb_090782_010 0.1189544188 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
7 Hb_008020_020 0.1231869388 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
8 Hb_001246_160 0.1363702718 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
9 Hb_047442_010 0.1432581978 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_004586_130 0.1462559673 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000163_230 0.1464640363 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
12 Hb_001519_060 0.1474255641 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
13 Hb_012787_030 0.1513067787 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
14 Hb_001769_110 0.1546200316 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
15 Hb_000959_020 0.1567142944 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_001894_160 0.1597650058 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011671_110 0.1597901756 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
18 Hb_000622_210 0.1623419891 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
19 Hb_000680_180 0.1624730089 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
20 Hb_011930_120 0.1670322249 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015026_040 Hb_015026_040 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_041895_040 Hb_041895_040 Hb_015026_040--Hb_041895_040 Hb_005394_010 Hb_005394_010 Hb_015026_040--Hb_005394_010 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_090782_010 Hb_090782_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020 Hb_004586_130 Hb_004586_130 Hb_000221_230--Hb_004586_130 Hb_000221_230--Hb_008020_020 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_000221_230--Hb_041895_040 Hb_041895_040--Hb_005394_010 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_011671_110 Hb_011671_110 Hb_005394_010--Hb_011671_110 Hb_005394_010--Hb_001246_160 Hb_047442_010 Hb_047442_010 Hb_005394_010--Hb_047442_010 Hb_005394_010--Hb_000163_230 Hb_159809_050 Hb_159809_050 Hb_000445_100--Hb_159809_050 Hb_000421_230 Hb_000421_230 Hb_000445_100--Hb_000421_230 Hb_000749_070 Hb_000749_070 Hb_000445_100--Hb_000749_070 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280 Hb_000454_140 Hb_000454_140 Hb_090782_010--Hb_000454_140 Hb_090782_010--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_090782_010--Hb_000045_260 Hb_090782_010--Hb_008020_020 Hb_161901_020 Hb_161901_020 Hb_090782_010--Hb_161901_020 Hb_008020_020--Hb_047442_010 Hb_008020_020--Hb_004586_130 Hb_002876_070 Hb_002876_070 Hb_008020_020--Hb_002876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.77 558.132 610.936 258.467 69.9479 87.8873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.3331 52.5952 38.8977 30.0589 64.6705

CAGE analysis