Hb_000445_100

Information

Type -
Description -
Location Contig445: 112534-115271
Sequence    

Annotation

kegg
ID rcu:RCOM_0561800
description ganglioside-induced differentiation-associated protein 1, 2 gdap, putative
nr
ID XP_012078325.1
description PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
swissprot
ID O80662
description Glutathione S-transferase TCHQD OS=Arabidopsis thaliana GN=TCHQD PE=2 SV=1
trembl
ID A0A067KM38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12156 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutathione s-transferase tchqd

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42880: 114593-115096 , PASA_asmbl_42881: 112555-115263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_100 0.0 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
2 Hb_015026_040 0.1144133971 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
3 Hb_159809_050 0.1222303968 - - AT14A, putative [Ricinus communis]
4 Hb_000421_230 0.127640941 - - retinal degeneration B beta, putative [Ricinus communis]
5 Hb_000749_070 0.1305274898 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_090782_010 0.1312540293 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
7 Hb_003581_280 0.1345608514 - - KINASE 2B family protein [Populus trichocarpa]
8 Hb_001769_110 0.1357221126 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
9 Hb_041895_040 0.1367934125 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002685_200 0.1370089597 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
11 Hb_013358_020 0.1400896922 - - ccr4-associated factor, putative [Ricinus communis]
12 Hb_007253_010 0.1413234562 - - syntaxin, putative [Ricinus communis]
13 Hb_000925_030 0.1463393923 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000035_050 0.1491168846 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
15 Hb_000363_350 0.1496418899 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
16 Hb_002701_210 0.1517220981 - - Protein COBRA precursor, putative [Ricinus communis]
17 Hb_004108_240 0.1521880462 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
18 Hb_001638_030 0.1522108562 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
19 Hb_124677_040 0.152322215 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
20 Hb_000045_260 0.1531816628 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000445_100 Hb_000445_100 Hb_015026_040 Hb_015026_040 Hb_000445_100--Hb_015026_040 Hb_159809_050 Hb_159809_050 Hb_000445_100--Hb_159809_050 Hb_000421_230 Hb_000421_230 Hb_000445_100--Hb_000421_230 Hb_000749_070 Hb_000749_070 Hb_000445_100--Hb_000749_070 Hb_090782_010 Hb_090782_010 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_041895_040 Hb_041895_040 Hb_015026_040--Hb_041895_040 Hb_005394_010 Hb_005394_010 Hb_015026_040--Hb_005394_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020 Hb_007253_010 Hb_007253_010 Hb_159809_050--Hb_007253_010 Hb_159809_050--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_159809_050--Hb_013358_020 Hb_159809_050--Hb_003581_280 Hb_000035_050 Hb_000035_050 Hb_159809_050--Hb_000035_050 Hb_001135_030 Hb_001135_030 Hb_159809_050--Hb_001135_030 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_000749_070--Hb_013358_020 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_004117_170 Hb_004117_170 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_000454_140 Hb_000454_140 Hb_090782_010--Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_090782_010--Hb_000163_230 Hb_090782_010--Hb_000045_260 Hb_090782_010--Hb_008020_020 Hb_161901_020 Hb_161901_020 Hb_090782_010--Hb_161901_020 Hb_002900_120 Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_003581_280--Hb_004108_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2491 67.8961 67.5895 40.5906 10.7815 11.111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5752 16.3784 8.75571 3.20445 10.8384

CAGE analysis