Hb_000221_230

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig221: 254560-262715
Sequence    

Annotation

kegg
ID rcu:RCOM_1036950
description protein with unknown function
nr
ID XP_012067900.1
description PREDICTED: F-box protein At1g78280 [Jatropha curcas]
swissprot
ID Q9M9E8
description F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3
trembl
ID B9RJN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1036950 PE=4 SV=1
Gene Ontology
ID GO:0005829
description f-box protein at1g78280

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22797: 254556-257514 , PASA_asmbl_22798: 254556-257514 , PASA_asmbl_22799: 255029-255218 , PASA_asmbl_22800: 258071-258164 , PASA_asmbl_22802: 254556-261788 , PASA_asmbl_22803: 254556-261788 , PASA_asmbl_22804: 262098-262530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_230 0.0 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
2 Hb_015026_040 0.0731868298 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
3 Hb_004586_130 0.1048010142 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008020_020 0.1075071034 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
5 Hb_005394_010 0.133800671 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
6 Hb_000680_180 0.1363574108 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_041895_040 0.1389884655 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001989_060 0.1445323193 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
9 Hb_047442_010 0.1451311642 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_090782_010 0.1476938715 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
11 Hb_010126_030 0.1493678202 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
12 Hb_000283_100 0.1544586615 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
13 Hb_011930_120 0.1559229657 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
14 Hb_001059_090 0.1580799533 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
15 Hb_001246_160 0.1582101288 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
16 Hb_002151_130 0.159656817 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
17 Hb_002311_150 0.1624711379 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_000069_730 0.1659700416 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
19 Hb_032202_050 0.1665060659 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
20 Hb_061908_030 0.1665788824 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_230 Hb_000221_230 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_004586_130 Hb_004586_130 Hb_000221_230--Hb_004586_130 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_015026_040--Hb_041895_040 Hb_015026_040--Hb_005394_010 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_090782_010 Hb_090782_010 Hb_015026_040--Hb_090782_010 Hb_015026_040--Hb_008020_020 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_008020_020--Hb_090782_010 Hb_047442_010 Hb_047442_010 Hb_008020_020--Hb_047442_010 Hb_008020_020--Hb_004586_130 Hb_008020_020--Hb_002876_070 Hb_005394_010--Hb_041895_040 Hb_011671_110 Hb_011671_110 Hb_005394_010--Hb_011671_110 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_005394_010--Hb_047442_010 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000680_180--Hb_000283_100 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_041895_040--Hb_001246_160 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3517 96.1295 88.0843 29.8121 9.32975 12.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31078 4.51895 4.19739 4.18969 7.70482

CAGE analysis