Hb_011930_120

Information

Type -
Description -
Location Contig11930: 99962-102750
Sequence    

Annotation

kegg
ID rcu:RCOM_0698960
description hypothetical protein
nr
ID XP_012091969.1
description PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21718 PE=4 SV=1
Gene Ontology
ID GO:0016874
description actin cross-linking

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05717: 99842-102733 , PASA_asmbl_05718: 99869-102733
cDNA
(Sanger)
(ID:Location)		 014_C15.ab1: 101871-102733 , 039_F20.ab1: 101902-102733

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_120 0.0 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
2 Hb_001579_070 0.0964474715 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
3 Hb_000680_180 0.1001363324 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
4 Hb_000086_620 0.1044379858 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
5 Hb_001989_060 0.1132130132 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
6 Hb_000805_040 0.1165844498 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_002498_250 0.1197954011 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_001519_060 0.1200312905 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
9 Hb_010126_030 0.1273970103 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
10 Hb_002876_070 0.1300845208 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_004586_130 0.134026915 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004712_160 0.1350933843 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
13 Hb_001294_050 0.1366167895 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_061908_030 0.1382100978 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
15 Hb_001623_410 0.1387536129 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
16 Hb_000283_100 0.1393830121 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
17 Hb_000622_210 0.1411039755 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
18 Hb_000318_410 0.1427078662 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
19 Hb_001863_270 0.1475927477 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
20 Hb_000003_240 0.1479311667 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011930_120 Hb_011930_120 Hb_001579_070 Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_011930_120--Hb_000680_180 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_001989_060 Hb_001989_060 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_002498_250 Hb_002498_250 Hb_011930_120--Hb_002498_250 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_000680_180--Hb_001989_060 Hb_001623_410 Hb_001623_410 Hb_000086_620--Hb_001623_410 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040 Hb_001989_060--Hb_000283_100 Hb_001989_060--Hb_010126_030 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_000805_040--Hb_007120_010 Hb_094437_050 Hb_094437_050 Hb_002498_250--Hb_094437_050 Hb_002498_250--Hb_000373_250 Hb_005725_280 Hb_005725_280 Hb_002498_250--Hb_005725_280 Hb_004218_080 Hb_004218_080 Hb_002498_250--Hb_004218_080 Hb_002498_250--Hb_007120_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.60606 152.833 113.065 52.0207 5.8049 7.05787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21156 14.3899 5.55237 7.36626 30.8826

CAGE analysis