Hb_011360_090

Information

Type -
Description -
Location Contig11360: 44859-48302
Sequence    

Annotation

kegg
ID rcu:RCOM_0524670
description ATP binding protein, putative
nr
ID XP_012084802.1
description PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A067JTF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19920 PE=4 SV=1
Gene Ontology
ID GO:0003682
description at-rich interactive domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04090: 46339-47574 , PASA_asmbl_04091: 48506-48854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_090 0.0 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
2 Hb_012787_040 0.0818796471 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
3 Hb_000805_040 0.0916067096 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_001662_170 0.0984451896 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_009040_010 0.1030159876 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
6 Hb_000803_060 0.1093442174 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
7 Hb_006414_020 0.1131007647 transcription factor TF Family: MYB -
8 Hb_002534_050 0.1134922237 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
9 Hb_000071_140 0.1139123547 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
10 Hb_001258_150 0.1160759189 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
11 Hb_003752_120 0.1185499108 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
12 Hb_007007_080 0.1206499304 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004032_310 0.1218572029 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
14 Hb_001863_270 0.1228529698 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
15 Hb_001489_120 0.1242132741 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_004106_010 0.1286008836 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
17 Hb_001053_200 0.1300811697 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_001989_060 0.1318893958 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
19 Hb_004712_160 0.1319543438 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
20 Hb_005496_160 0.1351933308 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011360_090 Hb_011360_090 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_001662_170 Hb_001662_170 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_003752_120 Hb_003752_120 Hb_012787_040--Hb_003752_120 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_001662_170 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_001662_170--Hb_004106_010 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_002534_050 Hb_002534_050 Hb_009040_010--Hb_002534_050 Hb_001258_150 Hb_001258_150 Hb_009040_010--Hb_001258_150 Hb_000071_140 Hb_000071_140 Hb_009040_010--Hb_000071_140 Hb_132840_090 Hb_132840_090 Hb_009040_010--Hb_132840_090 Hb_009040_010--Hb_001662_170 Hb_000803_060--Hb_006414_020 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_000803_060--Hb_003752_120 Hb_000803_060--Hb_004032_310 Hb_006414_020--Hb_001489_120 Hb_006414_020--Hb_012787_040 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43382 87.4469 32.8059 24.9351 7.33081 6.71447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30426 2.93656 5.88296 7.38664 11.5904

CAGE analysis