Hb_001489_120

Information

Type -
Description -
Location Contig1489: 109003-118679
Sequence    

Annotation

kegg
ID rcu:RCOM_0697970
description alpha-amylase, putative (EC:3.2.1.60)
nr
ID XP_012091935.1
description PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q94A41
description Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=2 SV=1
trembl
ID A0A067JNZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21695 PE=4 SV=1
Gene Ontology
ID GO:0004556
description alpha-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12372: 109076-118933 , PASA_asmbl_12373: 117549-118048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_120 0.0 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
2 Hb_000071_140 0.0838134613 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
3 Hb_001258_150 0.086525137 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
4 Hb_004032_310 0.0883846699 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
5 Hb_000803_060 0.1060484471 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
6 Hb_002793_060 0.1083147894 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
7 Hb_006414_020 0.1107961543 transcription factor TF Family: MYB -
8 Hb_001662_170 0.1132591798 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
9 Hb_002534_050 0.1150315125 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
10 Hb_001865_060 0.1212917825 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_011360_090 0.1242132741 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_000221_060 0.1245730403 - - -
13 Hb_000448_060 0.1274643028 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
14 Hb_012787_040 0.1287083609 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_006111_030 0.1352408815 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
16 Hb_012725_040 0.1352991739 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_009040_010 0.1354566629 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
18 Hb_000069_730 0.1376285981 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
19 Hb_003752_120 0.1380381262 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
20 Hb_056012_010 0.1382651357 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001489_120 Hb_001489_120 Hb_000071_140 Hb_000071_140 Hb_001489_120--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_001489_120--Hb_001258_150 Hb_004032_310 Hb_004032_310 Hb_001489_120--Hb_004032_310 Hb_000803_060 Hb_000803_060 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_001258_150--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_012787_040 Hb_012787_040 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_006414_020 Hb_000803_060--Hb_003752_120 Hb_000803_060--Hb_004032_310 Hb_002793_060--Hb_004032_310 Hb_002793_060--Hb_001662_170 Hb_002793_060--Hb_002534_050 Hb_002793_060--Hb_000071_140 Hb_002774_150 Hb_002774_150 Hb_002793_060--Hb_002774_150 Hb_006414_020--Hb_012787_040 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3313 135.769 32.006 18.9114 12.2121 13.9198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73048 8.0655 6.7514 14.1746 19.8472

CAGE analysis