Hb_048755_020

Information

Type -
Description -
Location Contig48755: 9551-14710
Sequence    

Annotation

kegg
ID rcu:RCOM_1034310
description WD-repeat protein, putative
nr
ID KDP20228.1
description hypothetical protein JCGZ_09860 [Jatropha curcas]
swissprot
ID Q9Y7K5
description Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=3 SV=2
trembl
ID A0A067JBZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45072: 9601-14714 , PASA_asmbl_45073: 9601-11551 , PASA_asmbl_45074: 9601-14361 , PASA_asmbl_45076: 12953-13635
cDNA
(Sanger)
(ID:Location)		 035_D09.ab1: 11009-14713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048755_020 0.0 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
2 Hb_007313_070 0.0461885126 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
3 Hb_001437_010 0.0783852993 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
4 Hb_000071_140 0.1072756153 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
5 Hb_000045_260 0.1147937882 - - protein with unknown function [Ricinus communis]
6 Hb_004994_300 0.1158479714 - - synaptotagmin, putative [Ricinus communis]
7 Hb_000186_200 0.1191055946 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
8 Hb_007849_050 0.1195879698 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
9 Hb_000454_140 0.1197704192 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
10 Hb_002400_160 0.1203921034 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
11 Hb_001410_130 0.1205236276 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
12 Hb_000163_230 0.1206527238 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
13 Hb_002897_050 0.1223126709 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
14 Hb_003001_070 0.1231489197 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
15 Hb_004032_310 0.1249236565 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
16 Hb_003581_280 0.1281539547 - - KINASE 2B family protein [Populus trichocarpa]
17 Hb_002248_120 0.1282868024 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_003605_220 0.1300699453 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
19 Hb_124677_040 0.1304546564 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
20 Hb_004108_240 0.1310808161 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]

Gene co-expression network

sample Hb_048755_020 Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_048755_020--Hb_007313_070 Hb_001437_010 Hb_001437_010 Hb_048755_020--Hb_001437_010 Hb_000071_140 Hb_000071_140 Hb_048755_020--Hb_000071_140 Hb_000045_260 Hb_000045_260 Hb_048755_020--Hb_000045_260 Hb_004994_300 Hb_004994_300 Hb_048755_020--Hb_004994_300 Hb_000186_200 Hb_000186_200 Hb_048755_020--Hb_000186_200 Hb_007313_070--Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_007313_070--Hb_003605_220 Hb_007313_070--Hb_001437_010 Hb_172421_010 Hb_172421_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_001489_120 Hb_001489_120 Hb_000071_140--Hb_001489_120 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_001258_150 Hb_001258_150 Hb_000071_140--Hb_001258_150 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_004994_300--Hb_003605_220 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_004994_300--Hb_172421_010 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_000186_200--Hb_002701_210 Hb_000186_200--Hb_000084_240 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000186_200--Hb_000163_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7837 98.1268 39.5481 31.3946 11.4575 13.5087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7284 10.8507 12.4526 9.61398 31.6019

CAGE analysis