Hb_000069_730

Information

Type transcription factor
Description TF Family: bZIP
Location Contig69: 738854-745076
Sequence    

Annotation

kegg
ID rcu:RCOM_1617330
description Common plant regulatory factor CPRF-1, putative
nr
ID XP_012083267.1
description PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q99089
description Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1
trembl
ID A0A067K8C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14301 PE=4 SV=1
Gene Ontology
ID GO:0005634
description g-box-binding factor 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54300: 738875-744603 , PASA_asmbl_54301: 738902-740478 , PASA_asmbl_54302: 740674-741065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_730 0.0 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
2 Hb_000084_240 0.1051491011 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
3 Hb_000071_140 0.110431037 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
4 Hb_001258_150 0.1209812902 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
5 Hb_002534_050 0.1222689363 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
6 Hb_005499_010 0.1224105083 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
7 Hb_090782_010 0.1285222268 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
8 Hb_000454_140 0.1309015079 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
9 Hb_007007_080 0.1324308831 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003224_030 0.1333314356 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
11 Hb_001489_120 0.1376285981 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
12 Hb_008020_020 0.1377480207 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
13 Hb_091226_010 0.1417874628 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
14 Hb_000163_230 0.1422823542 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
15 Hb_000186_200 0.1437165894 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_011360_090 0.1458839424 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
17 Hb_000045_260 0.1477677548 - - protein with unknown function [Ricinus communis]
18 Hb_002107_060 0.1498903041 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
19 Hb_000803_060 0.1499549815 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
20 Hb_009040_010 0.1516807969 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_730 Hb_000069_730 Hb_000084_240 Hb_000084_240 Hb_000069_730--Hb_000084_240 Hb_000071_140 Hb_000071_140 Hb_000069_730--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_000069_730--Hb_001258_150 Hb_002534_050 Hb_002534_050 Hb_000069_730--Hb_002534_050 Hb_005499_010 Hb_005499_010 Hb_000069_730--Hb_005499_010 Hb_090782_010 Hb_090782_010 Hb_000069_730--Hb_090782_010 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_001489_120 Hb_001489_120 Hb_000071_140--Hb_001489_120 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_001258_150--Hb_001489_120 Hb_000803_060 Hb_000803_060 Hb_001258_150--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_009040_010 Hb_009040_010 Hb_002534_050--Hb_009040_010 Hb_001662_170 Hb_001662_170 Hb_002534_050--Hb_001662_170 Hb_002534_050--Hb_011360_090 Hb_002534_050--Hb_001489_120 Hb_002534_050--Hb_001258_150 Hb_005499_010--Hb_011631_010 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_000454_140 Hb_000454_140 Hb_005499_010--Hb_000454_140 Hb_005499_010--Hb_000045_260 Hb_005499_010--Hb_002897_050 Hb_090782_010--Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_090782_010--Hb_000163_230 Hb_090782_010--Hb_000045_260 Hb_008020_020 Hb_008020_020 Hb_090782_010--Hb_008020_020 Hb_161901_020 Hb_161901_020 Hb_090782_010--Hb_161901_020 Hb_015026_040 Hb_015026_040 Hb_090782_010--Hb_015026_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2467 230.438 115.085 32.9802 18.4024 23.1328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3335 16.582 11.4763 28.8379 22.0525

CAGE analysis