Hb_001662_170

Information

Type -
Description -
Location Contig1662: 152154-161339
Sequence    

Annotation

kegg
ID rcu:RCOM_0783110
description phospholipase d delta, putative (EC:3.1.4.4)
nr
ID XP_012065321.1
description PREDICTED: phospholipase D delta-like [Jatropha curcas]
swissprot
ID Q9C5Y0
description Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2
trembl
ID A0A067LHQ6
description Phospholipase D OS=Jatropha curcas GN=JCGZ_22331 PE=3 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15344: 152179-160691 , PASA_asmbl_15345: 152530-155162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_170 0.0 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
2 Hb_004106_010 0.0803762338 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
3 Hb_012787_040 0.0806996974 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
4 Hb_004032_310 0.0898620128 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
5 Hb_001053_200 0.0931594364 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_003752_120 0.0939032853 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
7 Hb_011360_090 0.0984451896 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_158696_010 0.1063348574 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
9 Hb_008103_100 0.1070206852 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
10 Hb_002534_050 0.1087210943 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
11 Hb_003216_050 0.1107132836 - - PREDICTED: OBERON-like protein [Jatropha curcas]
12 Hb_005568_130 0.1128609997 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
13 Hb_001489_120 0.1132591798 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_000803_060 0.1136698807 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
15 Hb_004994_300 0.1202572262 - - synaptotagmin, putative [Ricinus communis]
16 Hb_000071_140 0.1232070695 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
17 Hb_172421_010 0.1237591171 - - cysteine protease [Hevea brasiliensis]
18 Hb_001951_240 0.1266210689 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
19 Hb_009040_010 0.1268047416 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
20 Hb_002793_060 0.1300082024 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]

Gene co-expression network

sample Hb_001662_170 Hb_001662_170 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_093177_010 Hb_093177_010 Hb_004106_010--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_004106_010--Hb_158696_010 Hb_004106_010--Hb_012787_040 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100 Hb_012787_040--Hb_003752_120 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_011360_090 Hb_012787_040--Hb_158696_010 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_001053_200--Hb_008103_100 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_001053_200--Hb_004032_310 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18109 38.3065 10.4584 11.1791 3.45364 4.16846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10241 1.14556 1.55374 5.52213 7.59692

CAGE analysis