Hb_000448_060

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig448: 88896-105602
Sequence    

Annotation

kegg
ID rcu:RCOM_1296350
description calmodulin-binding transcription activator (camta), plants, putative
nr
ID XP_012084590.1
description PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
swissprot
ID Q6NPP4
description Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1
trembl
ID A0A067JX34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20177 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43093: 88895-105951 , PASA_asmbl_43095: 92898-93430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000448_060 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
2 Hb_004032_310 0.0748659543 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
3 Hb_002915_070 0.0855103482 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
4 Hb_000062_080 0.1035269842 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
5 Hb_002154_020 0.1044966789 - - protein with unknown function [Ricinus communis]
6 Hb_001865_060 0.105201609 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
7 Hb_000805_230 0.1062789865 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
8 Hb_003752_120 0.1117117595 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_020178_050 0.1130640665 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
10 Hb_000802_190 0.1209757369 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
11 Hb_002249_050 0.1226430557 - - Auxin response factor, putative [Ricinus communis]
12 Hb_002942_110 0.1238295772 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
13 Hb_001489_120 0.1274643028 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
14 Hb_002477_120 0.1275789694 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
15 Hb_001561_010 0.1280461935 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
16 Hb_004994_300 0.1292447633 - - synaptotagmin, putative [Ricinus communis]
17 Hb_000941_080 0.1295374617 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
18 Hb_001410_130 0.1311406914 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
19 Hb_000010_350 0.1318498749 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
20 Hb_004324_060 0.1333988044 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_000448_060 Hb_000448_060 Hb_004032_310 Hb_004032_310 Hb_000448_060--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_000448_060--Hb_002915_070 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_004032_310--Hb_002915_070 Hb_002915_070--Hb_000805_230 Hb_000179_230 Hb_000179_230 Hb_002915_070--Hb_000179_230 Hb_002915_070--Hb_003752_120 Hb_103788_010 Hb_103788_010 Hb_002915_070--Hb_103788_010 Hb_000062_080--Hb_001865_060 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_001865_060--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_001865_060--Hb_012725_040 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_001865_060--Hb_004032_310 Hb_000805_230--Hb_000179_230 Hb_000120_160 Hb_000120_160 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_000805_230--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2795 127.961 34.1271 26.5568 16.6108 22.8889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.23719 6.51321 17.049 32.7212 20.8324

CAGE analysis