Hb_002154_020

Information

Type -
Description -
Location Contig2154: 21462-24821
Sequence    

Annotation

kegg
ID rcu:RCOM_1620540
description protein with unknown function (EC:1.3.1.74 2.7.11.22)
nr
ID XP_002512071.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID B9RED2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1620540 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22268: 21502-21932 , PASA_asmbl_22270: 22955-23327 , PASA_asmbl_22272: 23979-24980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_020 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002387_040 0.0932359223 - - protein transporter, putative [Ricinus communis]
3 Hb_002249_050 0.094841164 - - Auxin response factor, putative [Ricinus communis]
4 Hb_002477_120 0.0950629479 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
5 Hb_002400_160 0.0958120468 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
6 Hb_004032_310 0.1032168424 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_019863_060 0.1032447511 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
8 Hb_005496_160 0.1033924012 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
9 Hb_000448_060 0.1044966789 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
10 Hb_003752_120 0.1075407103 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
11 Hb_000059_130 0.107822413 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
12 Hb_007007_080 0.113455003 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000116_210 0.1142476071 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
14 Hb_000805_230 0.1142674812 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_002915_070 0.1156821599 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
16 Hb_001561_010 0.1194892278 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
17 Hb_000120_160 0.1195931748 - - unnamed protein product [Vitis vinifera]
18 Hb_000613_220 0.1220637153 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_004994_300 0.1241563773 - - synaptotagmin, putative [Ricinus communis]
20 Hb_159295_010 0.1254232395 - - hypothetical protein RCOM_1520720 [Ricinus communis]

Gene co-expression network

sample Hb_002154_020 Hb_002154_020 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_159295_010 Hb_159295_010 Hb_002249_050--Hb_159295_010 Hb_005765_040 Hb_005765_040 Hb_002249_050--Hb_005765_040 Hb_002249_050--Hb_002400_160 Hb_000613_220 Hb_000613_220 Hb_002249_050--Hb_000613_220 Hb_001488_040 Hb_001488_040 Hb_002249_050--Hb_001488_040 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_000473_150 Hb_000473_150 Hb_019863_060--Hb_000473_150 Hb_000059_130 Hb_000059_130 Hb_019863_060--Hb_000059_130 Hb_019863_060--Hb_002804_010 Hb_019863_060--Hb_002387_040 Hb_019863_060--Hb_002248_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.720995 7.87429 2.99152 2.15194 0.583636 1.08709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.656082 0.617535 1.00881 2.39963 2.14254

CAGE analysis